PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015939-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 269aa    MW: 30717.3 Da    PI: 9.2043
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015939-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-1097148255
                            HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            +  h e+Er+RR+++ +  + Lr++lP+ +    ++  s ++   +A++YI+++q
  SMil_00015939-RA_Salv  97 KIVHREIERQRRKEMADLHASLRSVLPSkC---IKGTRSASDQIHEATKYIRYMQ 148
                            678*************************88...9999****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.67795147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1195164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.79E-495152No hitNo description
Gene3DG3DSA:4.10.280.106.6E-997170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-797148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
LSNTYLNISI IPSTNHNTYC PLYVLILNKT DMKRDGRQQD EIPISVPDFS IWDIGFDQIL  60
FHNDPTNLEV KNHKGNKIAG KLQEIEGSRI SERLDKKIVH REIERQRRKE MADLHASLRS  120
VLPSKCIKGT RSASDQIHEA TKYIRYMQNK VRQLEMKRDS IKKSPEYEKQ GLLRERGSSS  180
KALPITVRVQ RCTAGVEVLI LAEGRSLHLS RILELLLDEG LNVVHCNCTK FDGRLHCTIQ  240
SEDVTSPSID LQMLQVKLTS NIGKFSDQG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574670.0KP257467.1 Salvia miltiorrhiza clone 34 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076501.15e-59transcription factor bHLH118
TrEMBLA0A0H3YB271e-174A0A0H3YB27_SALMI; Basic helix-loop-helix transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.17e-22bHLH family protein