PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00014480-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | Dof | ||||||||
Protein Properties | Length: 242aa MW: 26155.1 Da PI: 8.9568 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 114.7 | 4e-36 | 42 | 98 | 3 | 59 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +alkcprC stntkfCyynny+ sqPr+fCk+C+r+WtkGG+lrnvPvGggr++++ SMil_00014480-RA_Salv 42 AEALKCPRCASTNTKFCYYNNYNKSQPRHFCKSCKRHWTKGGTLRNVPVGGGRKNKR 98 6789***********************************************977665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-23 | 38 | 98 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.5E-31 | 44 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.391 | 45 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 47 | 83 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MGLSTKQVSG DQGVDWGQTF LQSAAAAETP KAPATRRLQA QAEALKCPRC ASTNTKFCYY 60 NNYNKSQPRH FCKSCKRHWT KGGTLRNVPV GGGRKNKRPK ISKSAATAPA GQKNMSNILY 120 HALIGRSSSP LVHETTTSKG VDNITSPFTG ANAAPTTEFQ LSSLGTFDMN ASLNPSSYQP 180 LNAFDHFSGN LDSVEESSIT TVNIPGSSGG AWDLPNYWSW NDIDVLTSGD LSMSWDDQDK 240 PL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096259.1 | 5e-99 | dof zinc finger protein DOF1.4-like | ||||
TrEMBL | A0A4D9B0R7 | 1e-112 | A0A4D9B0R7_SALSN; Uncharacterized protein | ||||
STRING | Migut.M01177.1.p | 9e-67 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6171 | 20 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 5e-30 | OBF binding protein 4 |