PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00014298-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 358aa MW: 41748.9 Da PI: 10.5091

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00014298-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.4	4.8e-52	45	169	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelv++yL +k++++++ + +i+e+d+yk++Pw+Lp +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg SMil_00014298-RA_Salv 45 LPPGFRFHPTDEELVMHYLIRKCASQSIAV-PIIAEIDLYKYDPWELPGLSLYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGA 131 79***********************999.88***********64455799**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk++ + + vg+kk Lvfy+g+ap+gekt+W+mheyrl SMil_00014298-RA_Salv 132 DKPIGQ--PKSVGIKKALVFYSGKAPRGEKTNWIMHEYRL 169 98..678*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-62	37	196	IPR003441	NAC domain
PROSITE profile	PS51005	60.737	45	196	IPR003441	NAC domain
Pfam	PF02365	9.2E-28	46	169	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
LLSPKFHTHI CNLYLYYIHR EREGDFLYIK SFKFLREMAA VNLQLPPGFR FHPTDEELVM 60 HYLIRKCASQ SIAVPIIAEI DLYKYDPWEL PGLSLYGEKE WYFFSPRDRK YPNGSRPNRA 120 AGSGYWKATG ADKPIGQPKS VGIKKALVFY SGKAPRGEKT NWIMHEYRLA DVDRSARKKN 180 NSLRLDDWVL CRIYNKKGTI ERRQQQQQQQ QQASVSSRNM TSAVTTEEDT KPVILTSVPE 240 SSAMVYDDFM YLTRRIRCRG CTRTRAARST CCRRRWRARR SWRSGRGRRW ISPSGTWTAG 300 ERAARCSRGI IRWSRCRRCC AVHEQAVLRA REFWSHVAQE TRVYECARAT APGLVSVL

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

LLSPKFHTHI CNLYLYYIHR EREGDFLYIK SFKFLREMAA VNLQLPPGFR FHPTDEELVM  60
HYLIRKCASQ SIAVPIIAEI DLYKYDPWEL PGLSLYGEKE WYFFSPRDRK YPNGSRPNRA  120
AGSGYWKATG ADKPIGQPKS VGIKKALVFY SGKAPRGEKT NWIMHEYRLA DVDRSARKKN  180
NSLRLDDWVL CRIYNKKGTI ERRQQQQQQQ QQASVSSRNM TSAVTTEEDT KPVILTSVPE  240
SSAMVYDDFM YLTRRIRCRG CTRTRAARST CCRRRWRARR SWRSGRGRRW ISPSGTWTAG  300
ERAARCSRGI IRWSRCRRCC AVHEQAVLRA REFWSHVAQE TRVYECARAT APGLVSVL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-78	39	202	9	174	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011069419.1	1e-134	NAC domain-containing protein 2
TrEMBL	A0A2G9HHN7	1e-134	A0A2G9HHN7_9LAMI; Uncharacterized protein
STRING	Migut.C01110.1.p	1e-132	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1239	24	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-111	NAC family protein