PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00013472-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | TALE | ||||||||
Protein Properties | Length: 260aa MW: 30056.9 Da PI: 7.0003 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.8 | 4.2e-09 | 196 | 230 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 + +yp+++++++L++ +gL+ +q+ +WF N+R ++ SMil_00013472-RA_Salv 196 RWPYPTEDDKKRLSETTGLDHKQINNWFINQRKRH 230 569*****************************885 PP | |||||||
2 | ELK | 25.8 | 2.4e-09 | 150 | 169 | 1 | 20 |
ELK 1 ELKhqLlrKYsgyLgsLkqE 20 ELK++ +rKYsgy +sL++E SMil_00013472-RA_Salv 150 ELKEMVMRKYSGYVSSLRKE 169 9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.7E-18 | 26 | 70 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.1E-19 | 28 | 67 | IPR005540 | KNOX1 |
SMART | SM01256 | 6.8E-18 | 73 | 124 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.3E-19 | 76 | 123 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.778 | 150 | 170 | IPR005539 | ELK domain |
SMART | SM01188 | 1.3E-4 | 150 | 171 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.1E-5 | 150 | 169 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.957 | 170 | 233 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.8E-12 | 172 | 237 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.33E-18 | 172 | 241 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-26 | 175 | 235 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.50E-12 | 182 | 234 | No hit | No description |
Pfam | PF05920 | 1.4E-16 | 190 | 229 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 208 | 231 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDEHLYASIS PFHYSSFDSD ESEEQDLIKA RIANHPLYPA LLSSYIDCTK VGAPPEMASL 60 LDQISKQDHP IFIATQIGTD PELDYFMRSY CDALRKYKEE LSKPMDEARS FLSSIGSQLT 120 HLCKQTLPSS TTSHHSTDEE MRCGEEVGVE LKEMVMRKYS GYVSSLRKEM AKKRKKGKLP 180 KDAISALFQW WNTHYRWPYP TEDDKKRLSE TTGLDHKQIN NWFINQRKRH WRPSHDMRFA 240 LIQGVAPHAD AHASFNDAIL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 174 | LRKEMAKKRK |
2 | 170 | 176 | AKKRKKG |
3 | 171 | 175 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00670 | PBM | Transfer from GRMZM2G087741 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087493.1 | 1e-110 | homeobox protein knotted-1-like 1 | ||||
Swissprot | Q9FP29 | 9e-85 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A0E3TKF5 | 1e-105 | A0A0E3TKF5_9ERIC; Knotted-like 6 protein | ||||
STRING | VIT_14s0060g01180.t01 | 2e-97 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA753 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70510.1 | 2e-70 | KNOTTED-like from Arabidopsis thaliana 2 |
Publications ? help Back to Top | |||
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