PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012735-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 349aa    MW: 37975.5 Da    PI: 5.9619
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012735-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284e-09184231455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++iN ++  L+el+P +    +k    a++L + +++++ Lq
  SMil_00012735-RA_Salv 184 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQALQ 231
                            8*************************9....89999*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.28E-9178235No hitNo description
SuperFamilySSF474598.37E-14178241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.5180230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-14180240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6184231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-8186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEPELGAAQP QFRSGEMGCA FDEIHGLISA PPVTGGSSFT ALLELPPPQA VELLVTEDFP  60
AKHQPPPPIF PTDIGLIHRA SKFSVFASAD NSLESNTILS VSNSIKVDSV KQEQLDADSH  120
RNSSSPAGSD QCLKSGKRKE REKKVKESNK KSKNMAANEP SDNGGGEELP YVHVRARRGQ  180
ATDSHSLAER ARREKINARM KLLQELVPGC NKISGTAMVL DEIINHVQAL QRQVELIQST  240
YLTRLHQFLS MRLAAVSPGI DLDLDSLFAV NGSSNDDSSY TGMFAPPICT EGQLDGTRQL  300
QLQQLWHCDE LHQSVWAREA DTSNFIAPAN SLMSYDSSSA NSASHSRAS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574600.0KP257460.1 Salvia miltiorrhiza clone 27 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078863.11e-159transcription factor bHLH48
SwissprotQ8VZ022e-60BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A0H3YC280.0A0A0H3YC28_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.K00063.1.p1e-141(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40292342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.29e-65bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]