PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011493-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family TALE
Protein Properties Length: 353aa    MW: 39887.4 Da    PI: 6.2412
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011493-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-092853221954
                            HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            Fe   ++yp+ +e+  LA+++gL+++qV++WF N R +
  SMil_00011493-RA_Salv 285 FEHflHPYPNDSEKLILASQTGLSKNQVSNWFINARVR 322
                            665559******************************88 PP
2BELL78.87.5e-26172237772
                   BELL   7 kkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                             k +kL+ lleeV++rY  y e ++ ++ sFea+ag g+ k+Yt+lAl a+S+hF  L++ai+ qi
  SMil_00011493-RA_Salv 172 VKLVKLIGLLEEVERRYDEYWEHMEELVHSFEAIAGSGAGKSYTALALLAMSKHFCRLRNAIVAQI 237
                            699*************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-16104235IPR006563POX domain
PfamPF075263.4E-29109234IPR006563POX domain
CDDcd000862.42E-11266327No hitNo description
SMARTSM003898.0E-9266330IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.9E-27271332IPR009057Homeodomain-like
SuperFamilySSF466892.82E-17272333IPR009057Homeodomain-like
PfamPF059201.1E-16283322IPR008422Homeobox KN domain
PROSITE profilePS5007111.661285326IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MVSEDSSFPH FDAYSSSSLP LSIQSLSERM SRSIDIGPDR HLIDLLGKSN EASQRLSLSL  60
GGGERGLNMN PAAAYLIAMK EGCDQMGFDD YDYAAMNQPY GNQSFAASMI GSSKYLQAAQ  120
SLLQEMLSVG GEGVDTSSRR YMDRLSRRRL SAKLKAELSS CELLCEKHGE YVKLVKLIGL  180
LEEVERRYDE YWEHMEELVH SFEAIAGSGA GKSYTALALL AMSKHFCRLR NAIVAQIHVT  240
KHKLLKDMSR LSQLSLMDHN RAIHAWRPLR GLPENSVTIL RAWLFEHFLH PYPNDSEKLI  300
LASQTGLSKN QVSNWFINAR VRLWKPMIEE MYKEEFEESS TESDQLLPPD LAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16272330563Homeobox protein Meis2
3k2a_B1e-16272330563Homeobox protein Meis2
4xrs_A1e-16272329158Homeobox protein Meis1
4xrs_B1e-16272329158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083617.11e-134BEL1-like homeodomain protein 11
SwissprotQ1PFD17e-80BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A4D9C0I30.0A0A4D9C0I3_SALSN; Uncharacterized protein
STRINGVIT_18s0001g13130.t011e-113(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86022228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-67BEL1-like homeodomain 11