PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00011401-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | bHLH | ||||||||
Protein Properties | Length: 205aa MW: 23366.6 Da PI: 5.2644 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28 | 4e-09 | 101 | 145 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r+RR++i + +eL +l+P ++++ ae+L+ A +YIk Lq SMil_00011401-RA_Salv 101 SIAARQRRRKITLKTQELGKLVPGG-----QRMNTAEMLQSAYNYIKFLQ 145 6788*******************96.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.167 | 95 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-12 | 96 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-12 | 96 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.93E-9 | 98 | 149 | No hit | No description |
SMART | SM00353 | 2.6E-10 | 101 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.9E-7 | 101 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MALSYYTFQQ PDYDPELQSL LNPDDYSLLC EDLTYHANGL PLDLDNLTTP FLLPHQQQQS 60 QAPFPKRHKL SLPEFVSLPQ FPAADFSCES AKNETSLSAQ SIAARQRRRK ITLKTQELGK 120 LVPGGQRMNT AEMLQSAYNY IKFLQAQVAL LGSHHQEVPF EGEEELQNLL ESPLIQEKLY 180 STQHCLLPIP ICWKRIIDDS RPLPS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP257438 | 0.0 | KP257438.1 Salvia miltiorrhiza clone 5 basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020554086.1 | 9e-40 | transcription factor bHLH52 | ||||
TrEMBL | A0A0H3Y8R6 | 1e-148 | A0A0H3Y8R6_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_009771680.1 | 2e-38 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3856 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34820.1 | 4e-17 | bHLH family protein |