PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00010610-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 848aa MW: 93175.3 Da PI: 7.3661 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58 | 1.8e-18 | 343 | 443 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ SMil_00010610-RA_Salv 343 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSR 429 99**************************555567778***************9989999999***9.********************8 PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++ e++l+++++++ SMil_00010610-RA_Salv 430 MD-PEGKLLMGFRKA 443 76.888888888765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-29 | 335 | 445 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-19 | 340 | 442 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.76E-22 | 341 | 442 | No hit | No description |
Pfam | PF02362 | 6.2E-16 | 343 | 443 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.152 | 343 | 444 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-20 | 343 | 444 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 848 aa Download sequence Send to blast |
LFVASTKSSS KAAIYRPIKT QIARAKRNTF LTENLCLEME GGVCMNGICG SSSSVEWKKG 60 WPLRSGGFAT LCHNCGTAYK DLVFCETFHS EETGWRECTS CGKRLHCGCI ASSTLLELLD 120 TGGVNCTGCS KSCPRPYTPL EEKHKACGLS TENGTDRNSE RIVPAQSGDD AKMDCQENLL 180 PSPNANVTSR KLEDELASPE GIGYKLLSSS NQSPVGPSKN YDMFQESKSL HKSLVETNLS 240 ISLSASSNSN TLSGVMAEER QLNTAISSFQ QGCRPRHLLP RVPTILAAGL ETNSSSISQL 300 RVARPPVEGR VKSQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKVLSAS DAGRIGRLVL 360 PKACAEAYFP PISQPEGLPL RIQDVKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ 420 AGDTVTFSRM DPEGKLLMGF RKASNSVSVQ KQDSHYPMDM SAFQGDGLIG NAESLPLISG 480 YSGLLQSLKG NGSPSMTLFP KHVYLAQKKN IGAKSKRLLI DGHDSLELRL SWEEVQDLLQ 540 PPPTTKPNTV SVEDHEIEEF DEPPVFGKRS IFVVRLSGCS CSAPDEMDSR ELENLLRMHK 600 DFTKRRALTF PKPVHGQASQ ENVKALTNGA GNTSEPGSSS VATTTRHPRH RPGCSCIVCI 660 QPSSGKGKHK PMCTCNVCMT VKQRFKTLMM RKKKRQSERE AEIAQRNQFA KEEAEVDSVA 720 APQHVQLDNN AKRSESENLL KCQSDGGPCQ ENAENFNGGL DLNCYAAPSS RISMMNLLQK 780 ASLPLDTYLR QNGLTSLVVV SEQQESLTLV IAQASGETTT QAREDTAAQE HEGSNELSEK 840 EQREDDTW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 8e-70 | 321 | 450 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 681 | 692 | KQRFKTLMMRKK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095138.1 | 0.0 | B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
Refseq | XP_020553390.1 | 0.0 | B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
Refseq | XP_020553391.1 | 0.0 | B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A4D8Z0Q2 | 0.0 | A0A4D8Z0Q2_SALSN; Uncharacterized protein | ||||
STRING | Migut.J00040.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1491 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|