PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010610-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 848aa    MW: 93175.3 Da    PI: 7.3661
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010610-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.8e-18343443199
                            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++
  SMil_00010610-RA_Salv 343 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSR 429
                            99**************************555567778***************9989999999***9.********************8 PP

                            -SSSEE..EEEEE-S CS
                     B3  85 dgrsefelvvkvfrk 99 
                            ++  e++l+++++++
  SMil_00010610-RA_Salv 430 MD-PEGKLLMGFRKA 443
                            76.888888888765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-29335445IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-19340442IPR015300DNA-binding pseudobarrel domain
CDDcd100172.76E-22341442No hitNo description
PfamPF023626.2E-16343443IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152343444IPR003340B3 DNA binding domain
SMARTSM010191.9E-20343444IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
LFVASTKSSS KAAIYRPIKT QIARAKRNTF LTENLCLEME GGVCMNGICG SSSSVEWKKG  60
WPLRSGGFAT LCHNCGTAYK DLVFCETFHS EETGWRECTS CGKRLHCGCI ASSTLLELLD  120
TGGVNCTGCS KSCPRPYTPL EEKHKACGLS TENGTDRNSE RIVPAQSGDD AKMDCQENLL  180
PSPNANVTSR KLEDELASPE GIGYKLLSSS NQSPVGPSKN YDMFQESKSL HKSLVETNLS  240
ISLSASSNSN TLSGVMAEER QLNTAISSFQ QGCRPRHLLP RVPTILAAGL ETNSSSISQL  300
RVARPPVEGR VKSQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKVLSAS DAGRIGRLVL  360
PKACAEAYFP PISQPEGLPL RIQDVKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ  420
AGDTVTFSRM DPEGKLLMGF RKASNSVSVQ KQDSHYPMDM SAFQGDGLIG NAESLPLISG  480
YSGLLQSLKG NGSPSMTLFP KHVYLAQKKN IGAKSKRLLI DGHDSLELRL SWEEVQDLLQ  540
PPPTTKPNTV SVEDHEIEEF DEPPVFGKRS IFVVRLSGCS CSAPDEMDSR ELENLLRMHK  600
DFTKRRALTF PKPVHGQASQ ENVKALTNGA GNTSEPGSSS VATTTRHPRH RPGCSCIVCI  660
QPSSGKGKHK PMCTCNVCMT VKQRFKTLMM RKKKRQSERE AEIAQRNQFA KEEAEVDSVA  720
APQHVQLDNN AKRSESENLL KCQSDGGPCQ ENAENFNGGL DLNCYAAPSS RISMMNLLQK  780
ASLPLDTYLR QNGLTSLVVV SEQQESLTLV IAQASGETTT QAREDTAAQE HEGSNELSEK  840
EQREDDTW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A8e-703214502131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1681692KQRFKTLMMRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095138.10.0B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_020553390.10.0B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_020553391.10.0B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A4D8Z0Q20.0A0A4D8Z0Q2_SALSN; Uncharacterized protein
STRINGMigut.J00040.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]