PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00009948-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | DBB | ||||||||
Protein Properties | Length: 214aa MW: 23349.1 Da PI: 6.3837 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.8 | 1.8e-07 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC+ C ++ H SMil_00009948-RA_Salv 4 LCDVCESAAAILFCAADEASLCRACDDKVH 33 7*************************9998 PP | |||||||
2 | zf-B_box | 29 | 2.1e-09 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 e ++C+ +e+ ++ ++Ce +++ lC +C + H g H SMil_00009948-RA_Salv 52 EVPRCDICENAPAFFYCEVDGTSLCLQCDMIVHVGgkrtH 91 789***************************9995544455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.855 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.5E-7 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.1E-6 | 3 | 41 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.30E-6 | 3 | 45 | No hit | No description |
SuperFamily | SSF57845 | 9.61E-5 | 49 | 86 | No hit | No description |
PROSITE profile | PS50119 | 9.115 | 51 | 96 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.7E-10 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 9.6E-8 | 52 | 85 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.55E-7 | 54 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MRTLCDVCES AAAILFCAAD EASLCRACDD KVHMCNKLAS RHVRVGLAEP SEVPRCDICE 60 NAPAFFYCEV DGTSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGS GSSGEPGSQR 120 LSPGEAKREP SHTTSPLRGN KGVQNHRVSA DLTPDNNTEN DGNMENMFID LNSRPQRMPG 180 QAPTYQGRGD GLGDNSHQSE GVVPNGYFKR EPEK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088488.1 | 1e-112 | B-box zinc finger protein 19 | ||||
Refseq | XP_020551620.1 | 1e-112 | B-box zinc finger protein 19 | ||||
Refseq | XP_020551621.1 | 1e-112 | B-box zinc finger protein 19 | ||||
Refseq | XP_020551622.1 | 1e-112 | B-box zinc finger protein 19 | ||||
Swissprot | C0SVM5 | 6e-79 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A4D9C3S8 | 1e-124 | A0A4D9C3S8_SALSN; Uncharacterized protein | ||||
STRING | Migut.B00176.1.p | 1e-107 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3175 | 23 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 1e-79 | DBB family protein |