PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009493-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 255aa    MW: 27799.7 Da    PI: 9.6552
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009493-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.51.7e-232773349
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            en+sn qvtfskRr+g++KKA+EL++LC+ae+a+++fs+ +k+y +
  SMil_00009493-RA_Salv 27 MENHSNLQVTFSKRRAGLFKKASELCTLCGAEAAIVVFSPANKVYCF 73
                           79******************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.9E-321776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.9411777IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-251886IPR002100Transcription factor, MADS-box
CDDcd002651.41E-311884No hitNo description
PRINTSPR004044.4E-181939IPR002100Transcription factor, MADS-box
PfamPF003193.9E-242673IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-183954IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-185475IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSSSSKQAAG AAPRKSKGRQ KVKMAKMENH SNLQVTFSKR RAGLFKKASE LCTLCGAEAA  60
IVVFSPANKV YCFGHPNVNT LVDRLAAGME PPPPPSHLIM EAHRNSNIRD LNIELTRLDT  120
LLRAERRRAQ EIDLLRRAGH QQRSLDDLDH AQLCALKESV MEFKKSLDAK LHKEMFSGVG  180
AGADDTCRFP GFDLPKLSLG FGHLLPYSNG GLPADYSTVN INGGGGAYYG WSNGASSSTL  240
PNDPHAIATN MFQMF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088154.28e-70agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-42AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A4D9BG538e-89A0A4D9BG53_SALSN; MADS-box transcription factor, plant
STRINGMigut.B00479.1.p2e-61(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-45AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]