PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00009010-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | bHLH | ||||||||
Protein Properties | Length: 235aa MW: 26797.3 Da PI: 4.9331 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.6 | 5.1e-09 | 124 | 168 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r+RR++i + +eL +l+P ++++ ae+L+ A +YIk Lq SMil_00009010-RA_Salv 124 SIAARQRRRKITVKTQELGKLVPGG-----QRMNTAEMLQSAYNYIKFLQ 168 6788*******************96.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.078 | 118 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-11 | 119 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-12 | 120 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.51E-9 | 121 | 172 | No hit | No description |
SMART | SM00353 | 2.1E-10 | 124 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-6 | 124 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MALSYYSNWT SFQQPDYSGD DPELQSLLNP DDYFADSFCN SLLCDDLTYH ANGLPLELDN 60 LTTATQPPPF LLPHQQPLFH FPKRHKLYDY SLPEFVLPPP LPQFPAADFS CETAKNETSL 120 SAQSIAARQR RRKITVKTQE LGKLVPGGQR MNTAEMLQSA YNYIKFLQAQ VALLEFLGSH 180 HQEVPFEGEE ELQNLLESPL IQEKLYSTQH CLLPNKLAEQ VPLLKSNPHL LEKDH |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP257537 | 0.0 | KP257537.1 Salvia miltiorrhiza clone 104 basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020554086.1 | 5e-53 | transcription factor bHLH52 | ||||
TrEMBL | A0A0H3YB60 | 1e-171 | A0A0H3YB60_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | Migut.M01923.1.p | 2e-46 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3856 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34820.1 | 5e-18 | bHLH family protein |