PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00008800-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 387aa MW: 43276.8 Da PI: 6.7173

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00008800-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.6	1.1e-31	273	328	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH++F++a+++LGG++ AtPk+i+e+m+v+gLt+++vkSHLQkYRl+ SMil_00008800-RA_Salv 273 KQRRCWSPELHRQFINALQHLGGPQAATPKQIREHMQVDGLTNDEVKSHLQKYRLH 328 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.61E-17	270	331	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.691	270	330	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.6E-28	271	331	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.5E-27	273	328	IPR006447	Myb domain, plants
Pfam	PF00249	2.3E-8	275	326	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
LEEFRRSGGK MGSLIHPELG LDSRFSPKPW LPKPIGRFLA DVSQIRCVSD KILKLDDYVN 60 RLLDEMKKID AFKRELPLCM LLISDAIVAA QEELAQCKKL NSEPVLEEFI PIKKICTDEK 120 DDKVDDSKEK EVSSRDKKNW MSSVQLWNSD DQNTDSNTVY SSKKLPSNTD SNKTKRMGDE 180 IVQPVMDDLF ESGKNRAFVP FKGTPNLPVM AVGKKDTDEL PVPGLSLCTP GSKNSKEVIN 240 PIGSSYSRSS SSPANSTLQQ SFKAAGQLQT ARKQRRCWSP ELHRQFINAL QHLGGPQAAT 300 PKQIREHMQV DGLTNDEVKS HLQKYRLHMR RVATNSTSQS VGLWATHEQF GESLKQSNGQ 360 SGSPEGPLHL SRCPEGDVDA LEDEDDE

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

LEEFRRSGGK MGSLIHPELG LDSRFSPKPW LPKPIGRFLA DVSQIRCVSD KILKLDDYVN  60
RLLDEMKKID AFKRELPLCM LLISDAIVAA QEELAQCKKL NSEPVLEEFI PIKKICTDEK  120
DDKVDDSKEK EVSSRDKKNW MSSVQLWNSD DQNTDSNTVY SSKKLPSNTD SNKTKRMGDE  180
IVQPVMDDLF ESGKNRAFVP FKGTPNLPVM AVGKKDTDEL PVPGLSLCTP GSKNSKEVIN  240
PIGSSYSRSS SSPANSTLQQ SFKAAGQLQT ARKQRRCWSP ELHRQFINAL QHLGGPQAAT  300
PKQIREHMQV DGLTNDEVKS HLQKYRLHMR RVATNSTSQS VGLWATHEQF GESLKQSNGQ  360
SGSPEGPLHL SRCPEGDVDA LEDEDDE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088301.1	1e-166	myb family transcription factor EFM isoform X1
TrEMBL	A0A4D9ACU6	0.0	A0A4D9ACU6_SALSN; Uncharacterized protein
STRING	Migut.B00308.1.p	1e-125	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4361	24	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68670.1	2e-50	G2-like family protein