PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00007184-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 226aa MW: 25145.5 Da PI: 5.4109 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.1e-13 | 69 | 113 | 5 | 53 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 h Er RR+++++ f++L llP+ + +K +K++i+ +Av+YIk SMil_00007184-RA_Salv 69 HILTERERRKKMRDMFSNLHALLPHiP-----PKADKSTIVDEAVKYIKR 113 8889*********************88.....8***************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.662 | 64 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-14 | 67 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.3E-10 | 69 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.63E-11 | 69 | 118 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.1E-15 | 69 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-8 | 70 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 4.78E-4 | 154 | 186 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MGEEVEREGL WDDDQSWEFP KLATVEEDCG IKSADSDGQV AVKDNGSPPT PPEKGKKRSA 60 AAGGESELHI LTERERRKKM RDMFSNLHAL LPHIPPKADK STIVDEAVKY IKRVEQSVLE 120 LEKRKQSLMT QNQDLKTWNC GNVVLNVCGA DAHISVCSIR KPGLLAALCF TMERNNLEVV 180 SAQVSSCIYI IHARPAYGGS DQFQQAFAIE ENFKQAAAEI TMWLNS |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KP257509 | 0.0 | KP257509.1 Salvia miltiorrhiza clone 76 basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088239.1 | 5e-73 | transcription factor bHLH95-like isoform X1 | ||||
TrEMBL | A0A0H3YBU1 | 1e-169 | A0A0H3YBU1_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | GSMUA_Achr9P08780_001 | 3e-56 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1324 | 23 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49770.1 | 2e-24 | bHLH family protein |