PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00004439-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Trihelix

Protein Properties

Length: 556aa MW: 62505 Da PI: 11.3668

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00004439-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.5	1.7e-13	331	403	17	86
trihelix 17 meerlrrgklkkplWeevskkmrergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 + +l rg+l++++W+ev++ m++r ++++qC +k+e+l kry+++ +++++++ +s s++++f++++ SMil_00004439-RA_Salv 331 QWYSLHRGNLRGNHWQEVADDMASRCPaipPKTSIQCHHKMEKLYKRYRAEIQRSSSGARRSASSWAHFHNMH 403 5778899*************5554312478999***********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.1E-13	334	405	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MPTWHQKCXF SSLFSTPFPA PLNSPNSPGS HPPPWLRSSP HPPPDDTPTA TLAFPRRAGA 60 PRRPSPSSTP TRASGCSLLF SLRRNLDELL SKSSPSFFDF GVVLVCGREK NGREWRLGFG 120 IGVLGKMKMC GNGEWYEKKG EKGVLGQKSR LGPPKEAIPP FSRDHGMNRG QERGQNERRP 180 RPRLGPRVIA KNILDCFGAE ARGRARGRGP NRGLLGNFGA EARGLARGRG PDRGVLGFMR 240 SPLVRLRSPS SELRFGRRLR SRIPLEMNFN LIFLKLSNLS LIFPEITPKA TPSIKTQQNS 300 KWGNKHILTF NSRGKKTTIH AILRYEIHVC QWYSLHRGNL RGNHWQEVAD DMASRCPAIP 360 PKTSIQCHHK MEKLYKRYRA EIQRSSSGAR RSASSWAHFH NMHSMEKGSD PPQPPPTTKT 420 KTARPTTSSA STISTTATPT DLDPHPRSGF GSRCPEQHPP TLTPNPRIIP PNSSSGSKSV 480 VEAIQALGEG FMRMEKMKME MAQQIEEMRM EMEEVRERVR ADMERGNWEG GWRREREKVT 540 WDEEGGRERE RGRRGG

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MPTWHQKCXF SSLFSTPFPA PLNSPNSPGS HPPPWLRSSP HPPPDDTPTA TLAFPRRAGA  60
PRRPSPSSTP TRASGCSLLF SLRRNLDELL SKSSPSFFDF GVVLVCGREK NGREWRLGFG  120
IGVLGKMKMC GNGEWYEKKG EKGVLGQKSR LGPPKEAIPP FSRDHGMNRG QERGQNERRP  180
RPRLGPRVIA KNILDCFGAE ARGRARGRGP NRGLLGNFGA EARGLARGRG PDRGVLGFMR  240
SPLVRLRSPS SELRFGRRLR SRIPLEMNFN LIFLKLSNLS LIFPEITPKA TPSIKTQQNS  300
KWGNKHILTF NSRGKKTTIH AILRYEIHVC QWYSLHRGNL RGNHWQEVAD DMASRCPAIP  360
PKTSIQCHHK MEKLYKRYRA EIQRSSSGAR RSASSWAHFH NMHSMEKGSD PPQPPPTTKT  420
KTARPTTSSA STISTTATPT DLDPHPRSGF GSRCPEQHPP TLTPNPRIIP PNSSSGSKSV  480
VEAIQALGEG FMRMEKMKME MAQQIEEMRM EMEEVRERVR ADMERGNWEG GWRREREKVT  540
WDEEGGRERE RGRRGG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8028	23	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-17	Trihelix family protein