PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00001908-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | C2H2 | ||||||||
Protein Properties | Length: 315aa MW: 36183.7 Da PI: 8.2159 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00069 | 173 | 197 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C+k ++ ++++ H+++ H SMil_00001908-RA_Salv 173 FYCDLCNKQYKLAMEFEAHLSSydH 197 78*****************987555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00443 | 1.3E-17 | 76 | 121 | IPR000467 | G-patch domain |
PROSITE profile | PS50174 | 16.836 | 78 | 123 | IPR000467 | G-patch domain |
Pfam | PF01585 | 1.4E-15 | 79 | 119 | IPR000467 | G-patch domain |
SuperFamily | SSF57667 | 2.58E-5 | 171 | 202 | No hit | No description |
Pfam | PF12171 | 1.8E-5 | 173 | 200 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 175 | 197 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MSFSMILSVG WGLRRMDSRW YSGKQEMHTR RQQKDEAYEA TVLEDLAEDF RLPIGHRVTE 60 NVDLDNVEQA SLDTQLTSSN VGFRLLQKMG WKGKGLGKDE QGIIEPIKSG IRDAKLGLGK 120 QEEDDYFTAE ENIQRRKLDI EVAETEELVK KREVIAEREQ KIQSEVKEIR KVFYCDLCNK 180 QYKLAMEFEA HLSSYDHNHR KRFKQMRDMH GSSSRDDRLK REQQRQEREM AKFKQMADTH 240 KQLQQLQNQE EAGTLPAPPA PSNATAVADQ DQRKVLKFGF SAKGSTAKSS INIAAKNKKP 300 KVAVASVFGN DSDEE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092206.1 | 0.0 | G patch domain-containing protein 8 isoform X1 | ||||
Refseq | XP_011092207.1 | 0.0 | G patch domain-containing protein 8 isoform X1 | ||||
TrEMBL | A0A4D9BWN7 | 0.0 | A0A4D9BWN7_SALSN; Uncharacterized protein | ||||
STRING | Migut.N00974.1.p | 1e-178 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8604 | 14 | 15 |