PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001361-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 313aa    MW: 33962.8 Da    PI: 6.3745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001361-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.2e-072112481254
                            HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            RR+ri +++  L+el+P+a      + +Ka++L + ++Y+k L
  SMil_00001361-RA_Salv 211 RRERIAERMKALQELVPNA-----NRTDKASMLDEIIDYVKFL 248
                            9*****************8.....69***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.932199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-6210254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-11211257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-11211258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.99E-9211253No hitNo description
PfamPF000105.5E-5211248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
LTSTSNPLSL SSVFPNRNPH SHFGAMNNLN SLMNQHQMSS LHEIHDHSQF DPPSSHDEFL  60
HQMLSTTSPA SAFPWGGDDQ QHQISSARAM LLQQHQLLLS RSLAAANDLR SPTEADPGFF  120
PLPRDDRDDV VDGPSFKPAI AENDASIKAL FNGFTGSLGQ TTNQDQHFPH SQTDSFGVSA  180
SAAASQPSAA GQPRQAGEGQ GEGRPPTLTL RRERIAERMK ALQELVPNAN RTDKASMLDE  240
IIDYVKFLRL QVKVLSTSRL GGAAAVAPLL GDASSQGKKG EKEGMATAEQ KVAKLLEEDM  300
GSRCNIFRER VFA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575000.0KP257500.1 Salvia miltiorrhiza clone 67 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844124.17e-84PREDICTED: transcription factor bHLH66-like isoform X2
TrEMBLA0A0H3YC500.0A0A0H3YC50_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.K00336.1.p2e-82(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37592445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.12e-28LJRHL1-like 2