PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_19367.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 318aa MW: 36280.9 Da PI: 4.6875

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_19367.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23	1.5e-07	193	237	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P +Kl+ ae+ + A +Y+k Lq Rsa1.0_19367.1_g00001.1 193 SIAARERRRRIADKTHELTKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 237 567899***************86.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.3E-10	179	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.462	187	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-10	190	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-8	193	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-5	193	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.81E-4	209	240	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
DSFTFFFSSG FIIFALSSMD CLSHFFDRDQ PIQLQDCFIP DVDTTNPETD SFFFQSQPQL 60 QYHQPLFQEE APSQTLLELT DLDYLCDQFL PPQETCLPYP KTEIFNQTHD LDSFLPTPKL 120 QKLVSSSYQC HTHNHFSSPN PNFFNCYDQL DLAPEASIFP NFQVPDFPLE FKVGRGDEDR 180 GHDTKKPSLS SQSIAARERR RRIADKTHEL TKLIPGGQKL NTAEMFQAAA KYVKFLQSQV 240 GILQMMQTTT KTHISDAEIE TRVLLGSQAI QEKLSTDEVC LVPCGMVRDL ASEESIWRNP 300 MISGKINKFL SADMSTNF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_19367.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018466572.1	0.0	PREDICTED: transcription factor bHLH53-like
Swissprot	Q84RD0	1e-133	BH053_ARATH; Transcription factor bHLH53
TrEMBL	A0A078IRR0	1e-166	A0A078IRR0_BRANA; BnaCnng22590D protein
STRING	Bo4g039270.1	1e-166	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	1e-125	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]