PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08870.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 168aa    MW: 19037.1 Da    PI: 9.1935
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08870.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.4e-15852655
                             HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                Er+RR+++N++++ Lr ++P+      +K++Ka+iL+ A+ YI+ Lq
  Rsa1.0_08870.1_g00002.1  8 IVLERNRRQKLNQRLFALRAVVPNI-----TKMDKASILKDAISYIQGLQ 52
                             568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.412251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.63E-12552No hitNo description
SuperFamilySSF474591.01E-17568IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-18867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-15857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-12852IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
TSPASKNIVL ERNRRQKLNQ RLFALRAVVP NITKMDKASI LKDAISYIQG LQYEETKLEA  60
EIRELESTPK SSLSFGKDFD RDLLVPVTSK RMKQLDSGSS RSLIEVLELK VTFMGERTMV  120
VNVTCDKRTD TMVKLCEVLE SLNLIIITSN LNSFSGMIFN TLFIEVSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-15761963Transcription factor MYC2
5gnj_B1e-15761963Transcription factor MYC2
5gnj_E1e-15761963Transcription factor MYC2
5gnj_F1e-15761963Transcription factor MYC2
5gnj_G1e-15761963Transcription factor MYC2
5gnj_I1e-15761963Transcription factor MYC2
5gnj_M1e-15761963Transcription factor MYC2
5gnj_N1e-15761963Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_08870.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1363800.0AY136380.1 Arabidopsis thaliana putative protein (At5g57140) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018460883.11e-117PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV91e-104BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A398A1N11e-111A0A398A1N1_BRACM; Uncharacterized protein
STRINGBra006831.1-P1e-110(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.21e-108bHLH family protein