PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_07459.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 202aa MW: 22778.8 Da PI: 6.6346 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.8 | 3.4e-07 | 73 | 126 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ n++Er RR r+ ++ +L +llP s+ ++kK +i ++v YI +L Rsa1.0_07459.1_g00001.1 73 KKQERNANERLRRLRLHASYLTLGTLLPDHSSSSKKKWCAPSIMDRVVTYIPKL 126 67889************************87888899**************887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.357 | 72 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-7 | 72 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.23E-4 | 73 | 131 | No hit | No description |
Pfam | PF00010 | 2.6E-4 | 73 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-9 | 73 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-4 | 78 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MTSFSRFTQA YVNMPNHQDL ASSLLEDLFL HIPAETIGAS GEKNDTCQAQ PERKGKEVVL 60 HVQDAQESSG VAKKQERNAN ERLRRLRLHA SYLTLGTLLP DHSSSSKKKW CAPSIMDRVV 120 TYIPKLHNEV EELTLRKKKL VEEIESKSSR GLSERQDPHI RAISVLELEG SGDEIVVQIV 180 EKPSEGEDYI TVLKNNIIST LY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_07459.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018460726.1 | 1e-128 | PREDICTED: uncharacterized protein LOC108831696 | ||||
Swissprot | F4I8F9 | 3e-55 | BH160_ARATH; Transcription factor bHLH160 | ||||
TrEMBL | A0A3N6QF87 | 1e-98 | A0A3N6QF87_BRACR; Uncharacterized protein | ||||
STRING | Bra007968.1-P | 2e-92 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10558 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71200.1 | 2e-51 | bHLH family protein |
Publications ? help Back to Top | |||
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