PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05735.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 269aa    MW: 31354.4 Da    PI: 7.4541
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05735.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-18128183156
                              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              +rk+ ++tkeql  Le+ F+++ +++ +++ +L+k+l+L+ rq+ vWFqNrRa++k
  Rsa1.0_05735.1_g00002.1 128 KRKKKKLTKEQLASLEQSFQEDIKLDSDRKLKLSKELRLQPRQIAVWFQNRRARWK 183
                              79999**************************************************9 PP
2HD-ZIP_I/II112.33.1e-36129217189
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk++l+keq+++LE+sF+e+ kL+++rK +l++eL+lqprq+avWFqnrRAR+k k lE+ y++L+++yd +++ n++L++ev +
  Rsa1.0_05735.1_g00002.1 129 RKKKKLTKEQLASLEQSFQEDIKLDSDRKLKLSKELRLQPRQIAVWFQNRRARWKVKDLEESYDSLRQEYDVVSRANQMLHDEVMK 214
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lre 89 
                              Lr 
  Rsa1.0_05735.1_g00002.1 215 LRG 217
                              *95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-19112184IPR009057Homeodomain-like
SuperFamilySSF466891.33E-18116185IPR009057Homeodomain-like
PROSITE profilePS5007117.831125185IPR001356Homeobox domain
SMARTSM003894.4E-18127189IPR001356Homeobox domain
PfamPF000461.1E-15128183IPR001356Homeobox domain
CDDcd000863.97E-14137183No hitNo description
PROSITE patternPS000270160183IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSSNMIHKNR EIKGKDMEWS MTSNVENMRD AFLPVPCQES NSSNSLRSFF NYDPSAENIS  60
RCHSKNLGYD LTLSDEKYDT VDHRCLMMFL GNSYTPALTQ ATPVICVPES ENVTNEYGCP  120
SNNDETMKRK KKKLTKEQLA SLEQSFQEDI KLDSDRKLKL SKELRLQPRQ IAVWFQNRRA  180
RWKVKDLEES YDSLRQEYDV VSRANQMLHD EVMKLRGIIL KDHLMKMQST LNNNQIEGGS  240
QSYGTDQYST QMFVASTYLP PISQQRYPW
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05735.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022567767.11e-105putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR02e-78ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A3N6RH091e-125A0A3N6RH09_BRACR; Uncharacterized protein
STRINGBo9g181710.12e-99(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.13e-58homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]