PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_05324.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 317aa MW: 35125.9 Da PI: 6.9164

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_05324.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.2e-09	148	195	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Rsa1.0_05324.1_g00001.1 148 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 195 8***********************9....889**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.38E-8	142	199	No hit	No description
SuperFamily	SSF47459	1.7E-15	142	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.684	144	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-15	144	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-6	148	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-8	150	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MDLTGAFGAR SAAVEPCREP PGLESLHLGX XLHSYGALTF PSNSLLLERA ARFSVMANEQ 60 LQNGNVSGET TTTSSVPSNS NSNLDRVKTE PGETDSSSRR LENDRCGKRK EVDKKVKGSA 120 KKKSKSSEEN EKLPYVHVRA RRGQATDSHS LAERARREKI NARMKLLQEL VPGCDKIQGT 180 ALVLDEIINH VQSLQRQVEM LSMRLAAVNP RIDFNLDTIL ASESGSLMDG SFNGTAMQLA 240 WPHQVTEAEQ SFHHRQLQLQ QPPPQQQWPY DGLNQPTAWG REEDQGHGNE HTTLMAVSEN 300 MMVGSASLHP NQVKMEM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_05324.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352728	0.0	AK352728.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018432699.1	0.0	PREDICTED: transcription factor bHLH60-like
Swissprot	Q3EAI1	1e-147	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A397Y3N3	1e-174	A0A397Y3N3_BRACM; Uncharacterized protein
STRING	Bra007358.1-P	1e-172	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-130	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]