PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04954.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family DBB
Protein Properties Length: 188aa    MW: 20502.9 Da    PI: 6.0128
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04954.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.63.8e-06433534
                 zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                              C+ +e+  ++ fC  ++  lC +C ++ H
  Rsa1.0_04954.1_g00002.1  4 LCDACESAAAIVFCAADEAALCCSCDEKVH 33
                             6**************************998 PP
2zf-B_box284.7e-095292238
                 zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                             +++ C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  Rsa1.0_04954.1_g00002.1 52 NAPSCDICENAPAFFYCEIDGTSLCLQCDMVVHVGgkrtHR 92
                             7899*****************************66666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.253147IPR000315B-box-type zinc finger
CDDcd000212.85E-5345No hitNo description
SMARTSM003361.2E-5447IPR000315B-box-type zinc finger
SMARTSM003369.9E-145196IPR000315B-box-type zinc finger
PROSITE profilePS501199.3715196IPR000315B-box-type zinc finger
PfamPF006432.9E-75292IPR000315B-box-type zinc finger
CDDcd000211.68E-85496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MRILCDACES AAAIVFCAAD EAALCCSCDE KVHMCNKLAS RHVRVGLADP SNAPSCDICE  60
NAPAFFYCEI DGTSLCLQCD MVVHVGGKRT HRRFLLLRQR IEFPGDKPNH ADDLGLRCQE  120
ANRQKVSSSG RGQESNGNGD HDMIDLNSNP QRVHEPGSNH QEQGIDVNST NNHEPVGVVP  180
VGAFKRES
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04954.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436888.11e-137PREDICTED: B-box zinc finger protein 18 isoform X1
RefseqXP_018436889.11e-137PREDICTED: B-box zinc finger protein 18 isoform X1
RefseqXP_018463256.11e-137PREDICTED: B-box zinc finger protein 18 isoform X1
RefseqXP_018463258.11e-137PREDICTED: B-box zinc finger protein 18 isoform X1
RefseqXP_018463259.11e-137PREDICTED: B-box zinc finger protein 18 isoform X1
SwissprotQ9SJU51e-111BBX18_ARATH; B-box zinc finger protein 18
TrEMBLM4EQV71e-135M4EQV7_BRARP; Uncharacterized protein
STRINGBra031180.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21320.11e-113DBB family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]