PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_04420.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 192aa MW: 22682.2 Da PI: 4.4564 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.3 | 5.6e-31 | 8 | 129 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrF+P de+lv eyL+kkv ++++++ ++e++ ++v+PwdL +++e+y+F+k++ ++ +k r t sgyW++ Rsa1.0_04420.1_g00004.1 8 LPPGFRFDPDDEDLVFEYLAKKVLHRPMDF--DLPELRSCNVDPWDLL---GDKNTEVYYFVKKEDRE----KKGRETLSGYWEEF 84 79*************************999..49*************6...45778*******99876....6789999*****98 PP NAM 87 gkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +ev+++ ++l g kkt++fy g++p+g+ t W+m e+rl Rsa1.0_04420.1_g00004.1 85 EE-EEVMESgdrgCNHLEGRKKTFAFYIGKRPRGTITPWIMYEFRL 129 76.66666657666677***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-32 | 5 | 139 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.02 | 8 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-18 | 9 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MNGRSMRLPP GFRFDPDDED LVFEYLAKKV LHRPMDFDLP ELRSCNVDPW DLLGDKNTEV 60 YYFVKKEDRE KKGRETLSGY WEEFEEEEVM ESGDRGCNHL EGRKKTFAFY IGKRPRGTIT 120 PWIMYEFRLL SSRATRWSSS SLPWVSHSSL PWGEVENWRA VKVIVKEENE EEIEEDEQAS 180 DESDGEEVVQ SR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-18 | 6 | 130 | 15 | 143 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-18 | 6 | 130 | 15 | 143 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-18 | 6 | 130 | 15 | 143 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-18 | 6 | 130 | 15 | 143 | NO APICAL MERISTEM PROTEIN |
4dul_A | 7e-18 | 6 | 130 | 15 | 143 | NAC domain-containing protein 19 |
4dul_B | 7e-18 | 6 | 130 | 15 | 143 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_04420.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF974765 | 0.0 | KF974765.1 Brassica napus NAC transcription factor 97-1 (NAC97-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455122.1 | 1e-113 | PREDICTED: NAC domain-containing protein 41-like | ||||
TrEMBL | A0A0D3E9S1 | 1e-106 | A0A0D3E9S1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6E816 | 1e-106 | A0A3P6E816_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g097190.1 | 1e-107 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14666 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50820.1 | 1e-80 | NAC domain containing protein 97 |