PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04013.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 362aa    MW: 40960.6 Da    PI: 8.0325
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04013.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.17.8e-17104153155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Rsa1.0_04013.1_g00001.1 104 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 153
                              78*******************......55**********************99987 PP
2AP242.71.4e-13196243152
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                              s+y+GV+ +k  grW+A++  +     + k+++lg f+t+ eAa+a+++a+ k
  Rsa1.0_04013.1_g00001.1 196 SKYRGVTLHK-CGRWEARLGQF----LNkKYVYLGLFDTEMEAARAYDKAAIK 243
                              89********.7******5553....234**********77*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-8104153IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-16104162IPR016177DNA-binding domain
SMARTSM003807.6E-30105167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-17105161IPR001471AP2/ERF domain
PROSITE profilePS5103217.675105161IPR001471AP2/ERF domain
PfamPF008474.4E-9196243IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-17196255IPR016177DNA-binding domain
CDDcd000181.25E-23196254No hitNo description
PROSITE profilePS5103215.949197254IPR001471AP2/ERF domain
SMARTSM003807.2E-30197260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-17197254IPR001471AP2/ERF domain
PRINTSPR003677.7E-6198209IPR001471AP2/ERF domain
PRINTSPR003677.7E-6236256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MWNLNDSPDH HEESDGRWNR AGDVPISMSS SDMWLLSAPP VTRNFFPSQI MEQEVPGLIS  60
GSGFNRNQCL VRSDPSGSAR PENLELEITP PVKKSRRGPR SRSSQYRGVT FYRRTGRWES  120
HIWDCGKQVY LGGFDTAHAA ARAYDRAAVK FRGIDADINF NIEDYVEDVK QMSSLTKEEF  180
MHVIRRQSTG FPRGSSKYRG VTLHKCGRWE ARLGQFLNKK YVYLGLFDTE MEAARAYDKA  240
AIKSNGKDAV TNFDPKVYEE EHNSQAEKQW NDHSLDLCLG ESNSEEFGTK SEIGSMRNGF  300
RDEERLLGSH LSLAMTTTAT VGSDKQLDGG GKQVGMAASS GFSPRFPPWN HHTPRTFHFF  360
RP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04013.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018440030.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotQ9FH951e-170TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3
TrEMBLA0A3P6B4W40.0A0A3P6B4W4_BRACM; Uncharacterized protein
STRINGBra012139.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.11e-171target of early activation tagged (EAT) 3
Publications ? help Back to Top
  1. Zumajo-Cardona C,Pabón-Mora N
    Evolution of the APETALA2 Gene Lineage in Seed Plants.
    Mol. Biol. Evol., 2016. 33(7): p. 1818-32
    [PMID:27030733]