PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_03408.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 459aa MW: 50747.2 Da PI: 4.6815 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.3 | 1.7e-35 | 27 | 118 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 Fl+k+y++++d++++e++sws+ +nsfvv++ ef+k +Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F Rsa1.0_03408.1_g00002.1 27 FLSKTYDMVDDPSTNEVVSWSSGNNSFVVWNVPEFSKVLLPKHFKHNNFSSFVRQLNTYGFRKVDPDQ---------WEFANEGFL 103 9****************************************************************999.........********* PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkks 102 +++k+ll++i rk+ Rsa1.0_03408.1_g00002.1 104 RDQKQLLKSIVRKRP 118 ************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.9E-34 | 22 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.3E-38 | 23 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.0E-58 | 23 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.2E-30 | 27 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-19 | 27 | 50 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-19 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 66 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-19 | 78 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MEPVQSAPPA NSNSPSIPPP VNSVPPFLSK TYDMVDDPST NEVVSWSSGN NSFVVWNVPE 60 FSKVLLPKHF KHNNFSSFVR QLNTYGFRKV DPDQWEFANE GFLRDQKQLL KSIVRKRPSH 120 VQQNQQQTQV QDSPVGACVE VGKFGIEEEV ERLKRDKNVL MQELVRLRQQ QQATEHQLQN 180 VGQKVEVMEQ RQQQTMSFLA KAVQSPGFLN QLVQQNNNND GNKHIQGSNK KRRLPGDDEQ 240 ENCKGHDDEA NGLNRQIVKY QPSISEAAQT MLRQILNRSS SPRCESVSNY APTSNSLNSA 300 DRVSGVTMDE VSPNSALSAM KQVHEAGLVH HPQAGPCPSE GVAAAAASWS PESDLAGFGT 360 GDGVCFDPIM AALGGSLEIE SDEISPVGEG EVTELQNEAP KLSGVQDSFW EQFFADETPL 420 IGDDILSGAV ENSDIVMEQQ EMNHLTEQME LLSSATHRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-24 | 14 | 116 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-24 | 14 | 116 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-24 | 14 | 116 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00514 | DAP | Transfer from AT5G16820 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_03408.1_g00002.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018462631.1 | 0.0 | PREDICTED: heat stress transcription factor A-1b-like isoform X1 | ||||
Swissprot | O81821 | 0.0 | HFA1B_ARATH; Heat stress transcription factor A-1b | ||||
TrEMBL | A0A3N6RAY6 | 0.0 | A0A3N6RAY6_BRACR; Uncharacterized protein | ||||
STRING | XP_006400223.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2236 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 0.0 | heat shock factor 3 |
Publications ? help Back to Top | |||
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