PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_03012.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | YABBY | ||||||||
Protein Properties | Length: 237aa MW: 26178.7 Da PI: 8.5067 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 275.7 | 5.5e-85 | 17 | 198 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.......lleelkveee 80 d+ sss+q+Cyv+C+fC+t+lavsvP +slfk+vtvrCGhC++llsv++++++ ll+++s++++s+ ++ llee+++ ++ Rsa1.0_03012.1_g00002.1 17 DHISSSDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVNMRALLLPSVSNIGHSYLPSpsppppnLLEEMRNGGQ 102 7899***************************************************************999999************* PP YABBY 81 nlksnvekeesastsvssekl......senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 n+++n+++++++ +++s+e++ + + +e+pr+pp++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknW Rsa1.0_03012.1_g00002.1 103 NINMNMMMNHQPAAHHSNESFvmatrnGRVDLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNW 188 **************9999887778776666889***************************************************** PP YABBY 161 ahfPkihfgl 170 ahfP+ihfgl Rsa1.0_03012.1_g00002.1 189 AHFPHIHFGL 198 ********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.1E-69 | 21 | 198 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.2E-8 | 143 | 192 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 8.8E-5 | 146 | 192 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MSSMSMSSSS APTYPPDHIS SSDQLCYVHC SFCDTVLAVS VPPSSLFKTV TVRCGHCSNL 60 LSVTVNMRAL LLPSVSNIGH SYLPSPSPPP PNLLEEMRNG GQNINMNMMM NHQPAAHHSN 120 ESFVMATRNG RVDLQEMPRP PPANRPPEKR QRVPSAYNRF IKEEIQRIKA GNPDISHREA 180 FSAAAKNWAH FPHIHFGLMP DHPPTKKANV RQQEGEEVMM GREGFYGSAA NVGVTHN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10457020, PubMed:12417699, PubMed:19837869). Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity (PubMed:10457020, PubMed:12417699). {ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_03012.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF136540 | 0.0 | AF136540.1 Arabidopsis thaliana YABBY3 (YABBY3) mRNA, complete cds. | |||
GenBank | AY037186 | 0.0 | AY037186.1 Arabidopsis thaliana AT4g00180/F6N15_22 mRNA, complete cds. | |||
GenBank | BT002662 | 0.0 | BT002662.1 Arabidopsis thaliana At4g00180/F6N15_22 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018454386.1 | 1e-177 | PREDICTED: axial regulator YABBY 3 isoform X2 | ||||
Refseq | XP_018454387.1 | 1e-177 | PREDICTED: axial regulator YABBY 3 isoform X2 | ||||
Refseq | XP_018455886.1 | 1e-177 | PREDICTED: axial regulator YABBY 3 isoform X2 | ||||
Refseq | XP_018455887.1 | 1e-177 | PREDICTED: axial regulator YABBY 3 isoform X2 | ||||
Swissprot | Q9XFB1 | 1e-136 | YAB3_ARATH; Axial regulator YABBY 3 | ||||
TrEMBL | A0A078JBF7 | 1e-144 | A0A078JBF7_BRANA; BnaAnng18530D protein | ||||
TrEMBL | A0A397XXC6 | 1e-144 | A0A397XXC6_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F8A8 | 1e-144 | M4F8A8_BRARP; Uncharacterized protein | ||||
STRING | Bra037320.1-P | 1e-145 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2217 | 28 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.1 | 1e-125 | YABBY family protein |
Publications ? help Back to Top | |||
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