PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02931.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 251aa MW: 26376.9 Da PI: 4.312 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 146 | 167 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC+ Cg+sF ++ H+r H Rsa1.0_02931.1_g00006.1 146 KCNVCGRSFLSWKAVFGHLRAH 167 7*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.64E-5 | 142 | 171 | No hit | No description |
PROSITE profile | PS50157 | 9.307 | 145 | 172 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 147 | 167 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MSDPEKTKVN TEEKINENSD ESDYLWSDEE EEGEIREIVL ALPAMSLGDV DEATRQKAVA 60 AADLLIAAAQ EAAAKGNMEQ GVGGSGETAK KKRGRRPGTV MSDDLADVAG ASGSKATVVA 120 GDEEPAKKPR KKGSPKLINP PEGPPKCNVC GRSFLSWKAV FGHLRAHTDR GYFGFFPPPT 180 FNAAVEASGA AVAASCGGRG LGLGTGGLNF DLNADPVDDE EEETGTGSAP KFDLNRSPPQ 240 DEDENKEDNA E |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02931.1_g00006.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469467.1 | 0.0 | PREDICTED: uncharacterized protein LOC108841187 | ||||
TrEMBL | A0A0D3A1Q3 | 1e-119 | A0A0D3A1Q3_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6F726 | 1e-119 | A0A3P6F726_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g006290.1 | 1e-120 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5875 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35700.1 | 4e-55 | C2H2 family protein |