PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02929.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BES1
Protein Properties Length: 346aa    MW: 37259.5 Da    PI: 7.3703
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02929.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822163.71.1e-50280179
                   DUF822  1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleea 79
                             ++++r+ptw+ErEnnkrRERrRRaiaaki++GLR++Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrk sk ++ +
  Rsa1.0_02929.1_g00001.1  2 TSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWTVEPDGTTYRKVSKNPSPM 80
                             5899*******************************************************************99988544 PP
2DUF82230.21.6e-0910417772149
                   DUF822  72 gskpl.eeaeaagssasaspesslqsslkssalaspvesysaspksssfpspssldsislasa...asllpvlsvlslvsss 149
                              g++++ e+++++g sa+asp+ss+q        +s ++sy++sp ss+f+spss+++++l+     +sl+p+l++ls+++ss
  Rsa1.0_02929.1_g00001.1 104 GCSRPiERMDIGGGSATASPCSSYQ--------PSTCASYNPSPGSSNFMSPSSSSFANLTFGdghQSLMPWLKHLSTTTSS 177
                              677777*******************........9********************9999887557789*********997766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.2E-593172IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MTSGTRMPTW RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG  60
WTVEPDGTTY RKVSKNPSPM TDNLWGQVPP WLKSILNYLD LADGCSRPIE RMDIGGGSAT  120
ASPCSSYQPS TCASYNPSPG SSNFMSPSSS SFANLTFGDG HQSLMPWLKH LSTTTSSSSA  180
SSSSRLPNYL YIPGGSISAP VTPPFSSPTA STLTMNPFFV SSTPPSPTRQ TIPESEWFSG  240
IELAQSVPAS PTFSLVSQTP FGFKEAAGRG GSRMWTPGQS GTCSPAIITP GADQTSDVPM  300
SEAATPPEFV FGSNTNGLVK AWEGERIHVE SGSDDLELTL GNSSTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A4e-20675372441Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B4e-20675372441Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C4e-20675372441Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D4e-20675372441Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02929.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0504301e-95AY050430.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds.
GenBankAY0903311e-95AY090331.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds.
GenBankCP0026841e-95CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF9K201e-95AC005679.1 Arabidopsis thaliana chromosome 1 BAC F9K20 sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442758.10.0PREDICTED: BES1/BZR1 homolog protein 4
SwissprotQ9ZV881e-163BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA0A178WLH51e-161A0A178WLH5_ARATH; BEH4
STRINGAT1G78700.11e-162(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19172781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-145BES1/BZR1 homolog 4