PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02791.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 371aa    MW: 40122.3 Da    PI: 6.7294
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02791.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.65.5e-23252315164
                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                              eke+kre+rkq+NRe+ArrsR+RK+ae+eeL  kv++L aeN++L+++l +l++e++kl+ e+e
  Rsa1.0_02791.1_g00001.1 252 EKEVKREKRKQSNRESARRSRLRKQAETEELSVKVDALVAENMTLRSKLGQLNDESEKLRLENE 315
                              89*********************************************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.2E-251101IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.0E-14136230No hitNo description
Gene3DG3DSA:1.20.5.1706.3E-15248311No hitNo description
PfamPF001709.0E-22252314IPR004827Basic-leucine zipper domain
SMARTSM003386.5E-20252316IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.76254317IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.88E-10255311No hitNo description
CDDcd147022.59E-20257306No hitNo description
PROSITE patternPS000360259274IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGSNEEGKST QSDKPEQVQA PPPPPPPEQS NVHVYHHDWA AMQAYYGPRV AIPPQYYNSN  60
GHAPAPPPPY IWGSPSPMMA PYGTPYPPFC PPGGVYAHPA LQMGSQPQGP VSQATPVVTT  120
TPLNLEAPAN SPGNTDQGFM KKLKEFDGLA MSISNNKAGS AEHSSGPRNS QSSENDDSSN  180
GSDGNTTGGE QSRKKRSREG SPNNDGKPSS QIVPLLRDEN EKAAVTMGTP VMPTAMDFPQ  240
PCHGAPHEVW NEKEVKREKR KQSNRESARR SRLRKQAETE ELSVKVDALV AENMTLRSKL  300
GQLNDESEKL RLENEALLAQ LKATQTQATG KTENLISRVD NNNNNSVSGS SKNVEQQLLN  360
VSLRTDSVAA S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268274RRSRLRK
2268275RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box. {ECO:0000269|PubMed:1373374}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02791.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX921020.0X92102.1 R.sativus mRNA for G-box binding protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456889.10.0PREDICTED: G-box-binding factor 2 isoform X1
SwissprotP427751e-170GBF2_ARATH; G-box-binding factor 2
TrEMBLQ411660.0Q41166_RAPSA; G-Box binding protein (Fragment)
STRINGBra037382.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01120.11e-124G-box binding factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li B, et al.
    Promoter-based integration in plant defense regulation.
    Plant Physiol., 2014. 166(4): p. 1803-20
    [PMID:25352272]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]