PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02744.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 333aa MW: 37361.2 Da PI: 8.3534 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.9e-16 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E+e++++a k++G W++I +++g ++t+ q++s+ qk+ Rsa1.0_02744.1_g00004.1 66 REKWTEAEHEKFIEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 110 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.02E-15 | 60 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.87 | 61 | 115 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.0E-16 | 64 | 113 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 9.9E-13 | 65 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-9 | 66 | 106 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-13 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.39E-9 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MAMQEILELK NIRLSQVNCV IDQASLWDVK EHCESLCDRA SDELIISSTD AFCLKTRKPY 60 TITKQREKWT EAEHEKFIEA LKLYGRAWRR IEEHVGTKTA VQIRSHAQKF FTKVARDCGV 120 TSEKSIEIPP PRPKRKPMHP YPRKLVIPDA KEMAYAALTG GKLVPDEDNR SPTSVLSAHD 180 SDGLGSIGSN SPNSSSADYQ VHELSSHTEE SLSPEAETKQ QSLKLFGKTF VVGGYNSRTS 240 SIDSEDVKKK SDLETQSVRC SSSSSSSSEN AETELTTQVV VVLSEEFKRS ERSAFSQLKS 300 SAIGMKNMKG FMPYKKRIKV EENSLVKTSY PLW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator for cold-responsive gene expression and cold tolerance. Part of a regulatory feedback loop that controls a subset of the circadian outputs and modulates the central oscillator. Negatively self-regulates its own expression. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:23371945}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02744.1_g00004.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by light. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:19805390}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519515 | 1e-161 | AY519515.1 Arabidopsis thaliana MYB transcription factor (At5g37260) mRNA, complete cds. | |||
GenBank | BT010947 | 1e-161 | BT010947.1 Arabidopsis thaliana At5g37260 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018442666.1 | 0.0 | PREDICTED: protein REVEILLE 2 | ||||
Swissprot | F4K5X6 | 1e-152 | RVE2_ARATH; Protein REVEILLE 2 | ||||
TrEMBL | A0A3P5ZF15 | 0.0 | A0A3P5ZF15_BRACM; Uncharacterized protein | ||||
TrEMBL | M4FEI2 | 0.0 | M4FEI2_BRARP; Uncharacterized protein | ||||
STRING | Bra039503.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14432 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37260.1 | 1e-119 | MYB_related family protein |
Publications ? help Back to Top | |||
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