PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02122.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 586aa MW: 65935.1 Da PI: 7.3132

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02122.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.1	6.5e-30	119	204	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+ql Rsa1.0_02122.1_g00002.1 119 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQL 202 8***********************************999*************************98..55667***** PP trihelix 86 ea 87 ea Rsa1.0_02122.1_g00002.1 203 EA 204 85 PP
2	trihelix	55.5	1.5e-17	422	500	1	79
trihelix 1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstc 79 +W +qe+ +L+e+r++me+++++ g++++ lWeevs km++ gf ++s+ Ckekwe++++ kki++ +k++ ss+c Rsa1.0_02122.1_g00002.1 422 CWNEQEIIKLMEIRTSMESAFQEilgGCSDAFLWEEVSGKMSQLGFdQKSALLCKEKWEWISNGKKKITKKRKEK----SSSC 500 7*******************98889***************778*************99999999885....3334 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.98	118	177	IPR017877	Myb-like domain
Pfam	PF13837	2.0E-20	119	205	No hit	No description
CDD	cd12203	9.41E-20	119	184	No hit	No description
PROSITE profile	PS50090	5.181	415	480	IPR017877	Myb-like domain
CDD	cd12203	4.99E-16	421	485	No hit	No description
Pfam	PF13837	8.1E-12	421	503	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence Send to blast
MDDHHPQYGV PELRQLMQGG GRTTTTESPS TSSHFPSDFF GFNLAPAAPQ HHRLHQFTTD 60 QEMAILPRGI HGLGGGSSTA GNNSNLNANS SGGAVGFSGF LEGGGFGGGG GGDAGGTGRW 120 PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY 180 KKTKEGKAGR QDGKHYRFFR QLEALYGDSN NLVPCPSHNT QFMSNALLGF HTQNVMNVTT 240 TTSNIHNVDS VHGFHRQSLS LSNNYNSSEL ELMTSSSEGN DSSSRRKKRS WKNKIKEFID 300 MNMKRLIERQ DVWLEKLTKV IEDKEEQRMM KEEEWRKSEA ARIDKEHLFW SKERERMEAR 360 DVAVIEALQF LTGKTLVKPL CSSPEERING TNEIQNKSGD QNENESDQTM TNNVSVERSG 420 SCWNEQEIIK LMEIRTSMES AFQEILGGCS DAFLWEEVSG KMSQLGFDQK SALLCKEKWE 480 WISNGKKKIT KKRKEKSSSC GVYYPKTEEN TIYNNQASGY NANDQHHQMN ERANVGSSTS 540 TANAAAGNPS GAMAASTNCF PFFMGDGDQN LWESYGLRLN KGENHQ

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence Send to blast

MDDHHPQYGV PELRQLMQGG GRTTTTESPS TSSHFPSDFF GFNLAPAAPQ HHRLHQFTTD  60
QEMAILPRGI HGLGGGSSTA GNNSNLNANS SGGAVGFSGF LEGGGFGGGG GGDAGGTGRW  120
PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY  180
KKTKEGKAGR QDGKHYRFFR QLEALYGDSN NLVPCPSHNT QFMSNALLGF HTQNVMNVTT  240
TTSNIHNVDS VHGFHRQSLS LSNNYNSSEL ELMTSSSEGN DSSSRRKKRS WKNKIKEFID  300
MNMKRLIERQ DVWLEKLTKV IEDKEEQRMM KEEEWRKSEA ARIDKEHLFW SKERERMEAR  360
DVAVIEALQF LTGKTLVKPL CSSPEERING TNEIQNKSGD QNENESDQTM TNNVSVERSG  420
SCWNEQEIIK LMEIRTSMES AFQEILGGCS DAFLWEEVSG KMSQLGFDQK SALLCKEKWE  480
WISNGKKKIT KKRKEKSSSC GVYYPKTEEN TIYNNQASGY NANDQHHQMN ERANVGSSTS  540
TANAAAGNPS GAMAASTNCF PFFMGDGDQN LWESYGLRLN KGENHQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02122.1_g00002.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018444892.1	0.0	PREDICTED: trihelix transcription factor PTL-like
Refseq	XP_018444899.1	0.0	PREDICTED: trihelix transcription factor PTL-like
Swissprot	Q9LZS0	0.0	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A0D3AHN1	0.0	A0A0D3AHN1_BRAOL; Uncharacterized protein
STRING	Bo2g004170.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2767	28	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	0.0	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]