PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02039.1_g00005.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 484aa MW: 55754.1 Da PI: 9.9596

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02039.1_g00005.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.6	1.1e-07	207	227	6	26
HHHCHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKka 26 + +r++kNRe+A rsR+RK++ Rsa1.0_02039.1_g00005.1 207 KHKRMIKNRESAARSRARKQE 227 679*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.4E-4	198	277	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.5E-12	206	266	No hit	No description
CDD	cd14707	6.79E-24	206	271	No hit	No description
SuperFamily	SSF57959	6.03E-6	207	265	No hit	No description
PROSITE pattern	PS00036	0	209	224	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MMSSAKHQRN HRVSATNKNK ILNTFSSISS SSPPSSSSSS SPSYSQDSQE AQKSSLITME 60 EVWEDINLAS IHHLNRHSQH PQHNHEPRFR SHDHQNQNHD SMFQDFLNRP LNREPNMPTS 120 LNGNTTTVTA LFSSSPLGAP PATVLSLNSG AGFEFLDNRD PLVIPNSNLH SHNHLTDVPS 180 FNTSFEDLTC FGKKRGHESN EGSGNTKHKR MIKNRESAAR SRARKQECFL GFDSYLQAYT 240 NELEIEVAHL EAENERLRRQ QEQLRMAAAN QPPKKKTLQR RRTRYQRRRR PTLAYLHLFF 300 AATRSPPSLP ICLRSLDLGF CYGDRSARGE DLRWCLLLFW YRGEVVEVMI RSGGRILEFC 360 EDIVFSFDFL SLFRCWGARF RNSFYPLFLL WGRVASVHWS QLPWMLILDG QSLLQPRPLL 420 PAVNKTCSGS CYRFRRGVIV RIRRVENPFK VQWRDLVGIE GLSPWSSYLV LFVDEFPLGK 480 LVFE

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MMSSAKHQRN HRVSATNKNK ILNTFSSISS SSPPSSSSSS SPSYSQDSQE AQKSSLITME  60
EVWEDINLAS IHHLNRHSQH PQHNHEPRFR SHDHQNQNHD SMFQDFLNRP LNREPNMPTS  120
LNGNTTTVTA LFSSSPLGAP PATVLSLNSG AGFEFLDNRD PLVIPNSNLH SHNHLTDVPS  180
FNTSFEDLTC FGKKRGHESN EGSGNTKHKR MIKNRESAAR SRARKQECFL GFDSYLQAYT  240
NELEIEVAHL EAENERLRRQ QEQLRMAAAN QPPKKKTLQR RRTRYQRRRR PTLAYLHLFF  300
AATRSPPSLP ICLRSLDLGF CYGDRSARGE DLRWCLLLFW YRGEVVEVMI RSGGRILEFC  360
EDIVFSFDFL SLFRCWGARF RNSFYPLFLL WGRVASVHWS QLPWMLILDG QSLLQPRPLL  420
PAVNKTCSGS CYRFRRGVIV RIRRVENPFK VQWRDLVGIE GLSPWSSYLV LFVDEFPLGK  480
LVFE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	273	289	KKKTLQRRRTRYQRRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269\|PubMed:16099979, ECO:0000269\|PubMed:16099980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02039.1_g00005.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018471480.1	1e-164	PREDICTED: protein FD-like
Swissprot	Q84JK2	1e-114	FD_ARATH; Protein FD
TrEMBL	V4LSE7	1e-136	V4LSE7_EUTSA; Uncharacterized protein
STRING	XP_006412047.1	1e-137	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1934	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35900.1	6e-98	bZIP family protein

Publications ? help Back to Top
Ho WW,Weigel D Structural features determining flower-promoting activity of Arabidopsis FLOWERING LOCUS T. Plant Cell, 2014. 26(2): p. 552-64 [PMID:24532592] Ji H, et al. Downregulation of leaf flavin content induces early flowering and photoperiod gene expression in Arabidopsis. BMC Plant Biol., 2014. 14: p. 237 [PMID:25201173] Li L, et al. Expression of turtle riboflavin-binding protein represses mitochondrial electron transport gene expression and promotes flowering in Arabidopsis. BMC Plant Biol., 2014. 14: p. 381 [PMID:25547226] Sussmilch FC, et al. Pea VEGETATIVE2 Is an FD Homolog That Is Essential for Flowering and Compound Inflorescence Development. Plant Cell, 2015. 27(4): p. 1046-60 [PMID:25804541] Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006] Andrés F, et al. Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE. Plant Physiol., 2015. 169(3): p. 2187-99 [PMID:26417007] Kawamoto N,Endo M,Araki T Expression of a kinase-dead form of CPK33 involved in florigen complex formation causes delayed flowering. Plant Signal Behav, 2015. 10(12): p. e1086856 [PMID:26440648] Zhang L,Yu H,Lin S,Gao Y Molecular Characterization of FT and FD Homologs from Eriobotrya deflexa Nakai forma koshunensis. Front Plant Sci, 2016. 7: p. 8 [PMID:26834775] Hou CJ,Yang CH Comparative analysis of the pteridophyte Adiantum MFT ortholog reveals the specificity of combined FT/MFT C and N terminal interaction with FD for the regulation of the downstream gene AP1. Plant Mol. Biol., 2016. 91(4-5): p. 563-79 [PMID:27216814] Jung JH,Lee HJ,Ryu JY,Park CM SPL3/4/5 Integrate Developmental Aging and Photoperiodic Signals into the FT-FD Module in Arabidopsis Flowering. Mol Plant, 2016. 9(12): p. 1647-1659 [PMID:27815142] Jang S,Li HY,Kuo ML Ectopic expression of Arabidopsis FD and FD PARALOGUE in rice results in dwarfism with size reduction of spikelets. Sci Rep, 2017. 7: p. 44477 [PMID:28290557]