PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01949.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 280aa    MW: 31291.1 Da    PI: 8.4905
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01949.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.7e-19134188256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              rk+ +++k+q  +Le+ F+++++++ +++  LAkklgLt rqV vWFqNrRa+ k
  Rsa1.0_01949.1_g00003.1 134 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTK 188
                              677889***********************************************98 PP
2HD-ZIP_I/II122.81.6e-39134223191
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rlsk+q+++LE++F+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rLeke +e
  Rsa1.0_01949.1_g00003.1 134 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTDENRRLEKEAAE 219
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreel 91 
                              Lr +l
  Rsa1.0_01949.1_g00003.1 220 LR-AL 223
                              *9.54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.0E-24299IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.604.2E-18116188IPR009057Homeodomain-like
SuperFamilySSF466899.61E-19118191IPR009057Homeodomain-like
PROSITE profilePS5007117.135130190IPR001356Homeobox domain
SMARTSM003891.9E-17132194IPR001356Homeobox domain
PfamPF000461.5E-16134188IPR001356Homeobox domain
CDDcd000865.43E-16134191No hitNo description
PRINTSPR000317.4E-6161170IPR000047Helix-turn-helix motif
PROSITE patternPS000270165188IPR017970Homeobox, conserved site
PRINTSPR000317.4E-6170186IPR000047Helix-turn-helix motif
SMARTSM003401.2E-23190233IPR003106Leucine zipper, homeobox-associated
PfamPF021838.3E-8190224IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MMMGNEDLSL SLSLGFAQTH HPLKLNLKPT SSPISNLQMF PWNQTFVSSS DHQNQQSLRK  60
IDVNSLPSTV DLEEETRVSS PNSTISSTVI SGKRRSEREG TSGGAGDDLD ITLDGSSSRG  120
TSSEEEEYGG EACRKKLRLS KDQSAVLEDT FKEHNTLNPK QKLALAKKLG LTARQVEVWF  180
QNRRARTKLK QTEVDCEYLK RCVEKLTDEN RRLEKEAAEL RALKLSPRLY GQMSPPTTLL  240
TCPSCERVSG SSNHNQRSVS LSPWLQTSHG LTFDVMHPRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182190RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01949.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595686.10.0PREDICTED: homeobox-leucine zipper protein HAT1
SwissprotP466001e-180HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBLA0A0D3DEL40.0A0A0D3DEL4_BRAOL; Uncharacterized protein
STRINGBo7g105120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.11e-157Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Tan W, et al.
    Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought.
    PLoS Genet., 2018. 14(4): p. e1007336
    [PMID:29659577]