PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01664.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 90aa MW: 10249.5 Da PI: 5.0915 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25 | 4.3e-08 | 9 | 52 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT + + +a + + ++ +W +a+ +g +++++++ks++ Rsa1.0_01664.1_g00005.1 9 SWTSTQNKMFERALAFYDKDtpdRWQNVAKAVG-NKSAEEVKSHY 52 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.179 | 2 | 56 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.3E-5 | 6 | 58 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.69E-12 | 8 | 63 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.8E-6 | 9 | 52 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-4 | 16 | 52 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MASSSMSSSW TSTQNKMFER ALAFYDKDTP DRWQNVAKAV GNKSAEEVKS HYDILVEDLM 60 NIEQDLVPLP KYKTVDVGSK SRGINDYDLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-27 | 1 | 75 | 1 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01664.1_g00005.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189356 | 6e-94 | AC189356.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043O20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018464048.1 | 1e-61 | PREDICTED: protein RADIALIS-like 5 | ||||
Swissprot | Q8GW75 | 4e-49 | RADL5_ARATH; Protein RADIALIS-like 5 | ||||
TrEMBL | M4D6S3 | 2e-52 | M4D6S3_BRARP; Uncharacterized protein | ||||
STRING | Bra012183.1-P | 3e-53 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19510.1 | 7e-51 | RAD-like 5 |