PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01632.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 188aa MW: 21304.5 Da PI: 6.0176 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 79.4 | 7.7e-25 | 33 | 107 | 56 | 127 |
NAM 56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127 wyfFs r ++y++ ++++r+t sgyWk tgk+ +v+++ +++ +g kktLvf +g++p+ge+t+W+mhey+ Rsa1.0_01632.1_g00016.1 33 LAWYFFSDRGSRYRNTNKQSRTTPSGYWKITGKTAQVKERssgSHHSIGFKKTLVFLTGKSPHGERTNWIMHEYS 107 489***********************************998777777***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.572 | 1 | 126 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.1E-14 | 20 | 107 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.19E-28 | 32 | 126 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MSLDCVLYLT YLGLCKMLEP NRECFNRGGN WDLAWYFFSD RGSRYRNTNK QSRTTPSGYW 60 KITGKTAQVK ERSSGSHHSI GFKKTLVFLT GKSPHGERTN WIMHEYSNLS SPEEITSHVV 120 CKVEYTGPAD SLQIAGESTS ERTAESLQIA GESTSERPAK SLQIANEDGY SDSYWEGNTN 180 EDWDTYLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-16 | 20 | 123 | 66 | 165 | NAC domain-containing protein 19 |
3swm_B | 1e-16 | 20 | 123 | 66 | 165 | NAC domain-containing protein 19 |
3swm_C | 1e-16 | 20 | 123 | 66 | 165 | NAC domain-containing protein 19 |
3swm_D | 1e-16 | 20 | 123 | 66 | 165 | NAC domain-containing protein 19 |
3swp_A | 1e-16 | 20 | 123 | 66 | 165 | NAC domain-containing protein 19 |
3swp_B | 1e-16 | 20 | 123 | 66 | 165 | NAC domain-containing protein 19 |
3swp_C | 1e-16 | 20 | 123 | 66 | 165 | NAC domain-containing protein 19 |
3swp_D | 1e-16 | 20 | 123 | 66 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01632.1_g00016.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018466716.1 | 1e-113 | PREDICTED: NAC domain-containing protein 68-like | ||||
TrEMBL | D7MTJ9 | 1e-31 | D7MTJ9_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_8001417 | 2e-32 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM28939 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01540.2 | 1e-23 | NAC with transmembrane motif1 |