PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01411.1_g00007.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 366aa MW: 41995.4 Da PI: 7.1198

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01411.1_g00007.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37	7.5e-12	80	112	3	35
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekv 35 ++k +rr+++NReAAr+sR+RKka++++Le+ Rsa1.0_01411.1_g00007.1 80 PDKTQRRLAQNREAARKSRLRKKAYVQQLETSR 112 689**************************9854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.2E-5	78	142	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.9E-9	80	110	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.76	80	122	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.63E-7	82	122	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.9E-8	82	123	No hit	No description
PROSITE pattern	PS00036	0	85	100	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.5E-30	168	243	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MNTYTTTSSH FVPPTRFEIY DPLNQISTMW EESFKNNNGG FYTPNSVIIP SNEKPDSLSE 60 DGTGGTPHKF DQEASTSRHP DKTQRRLAQN REAARKSRLR KKAYVQQLET SRLKLIHLEQ 120 ELDRARQQGF YASNRVDTNP LSFPDDMGSG IVAFEMEYGH WVEKQNRQIS ELRSVLHGQV 180 SDVELRLLVD NAMKHYFQLF RMKSAAAKLD VFYIMSGMWK TSAERFFLWI GGFRPSELLK 240 VLLPHFDPMM DQQVLDVCNL RQSCQQAEDA VSQGMEKLQH TLAESVAAGE LGEGSYVPQI 300 TCAIERLEAL VSFVNQADNL RHETLQQMHR ILTTRQAARG LLALGEYFQR LRALSSSWET 360 RQREPT

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MNTYTTTSSH FVPPTRFEIY DPLNQISTMW EESFKNNNGG FYTPNSVIIP SNEKPDSLSE  60
DGTGGTPHKF DQEASTSRHP DKTQRRLAQN REAARKSRLR KKAYVQQLET SRLKLIHLEQ  120
ELDRARQQGF YASNRVDTNP LSFPDDMGSG IVAFEMEYGH WVEKQNRQIS ELRSVLHGQV  180
SDVELRLLVD NAMKHYFQLF RMKSAAAKLD VFYIMSGMWK TSAERFFLWI GGFRPSELLK  240
VLLPHFDPMM DQQVLDVCNL RQSCQQAEDA VSQGMEKLQH TLAESVAAGE LGEGSYVPQI  300
TCAIERLEAL VSFVNQADNL RHETLQQMHR ILTTRQAARG LLALGEYFQR LRALSSSWET  360
RQREPT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01411.1_g00007.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353085	0.0	AK353085.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-10-F22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018442773.1	0.0	PREDICTED: transcription factor TGA4
Refseq	XP_018442774.1	0.0	PREDICTED: transcription factor TGA4
Swissprot	Q39162	0.0	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A3P6D6I9	0.0	A0A3P6D6I9_BRACM; Uncharacterized protein
TrEMBL	Q4ABR5	0.0	Q4ABR5_BRARP; 80A08_2
STRING	Bra009063.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2976	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	0.0	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]