PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01310.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 253aa MW: 28617.5 Da PI: 9.6111 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.8 | 1.6e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRr+g+lKKA+ELSvLCdaevavi+fs++gkl+e+ss Rsa1.0_01310.1_g00004.1 9 KRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 64.2 | 4.7e-22 | 83 | 163 | 9 | 89 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 +++a++++ ++e++ Lk+ei++Lq+++ +l+G+ L++Lslk+Lq+LeqqL+ sl ++R++K++ + e+l+++ +el++ Rsa1.0_01310.1_g00004.1 83 NCKAENQEESTEVDLLKDEISKLQEKHLQLKGKRLNTLSLKQLQHLEQQLNVSLISVRERKEQRAELENETLRRQVQELKS 163 688999***********************************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.7E-43 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.786 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.50E-42 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 1.31E-31 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.5E-14 | 87 | 162 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.135 | 88 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAHELSVLCD AEVAVIVFSK SGKLFEFSSS 60 RCMKKTLLRY GNYQIPSDVV GINCKAENQE ESTEVDLLKD EISKLQEKHL QLKGKRLNTL 120 SLKQLQHLEQ QLNVSLISVR ERKEQRAELE NETLRRQVQE LKSFLPSIKQ HYAPSYIRCF 180 AIDPKSSLLN NNTCYGHINC SLLQNTNSDT TLQLGLPGEA HDTRKNEGDR ESPSSDSVTT 240 STTRASAQRI SLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-23 | 1 | 89 | 1 | 94 | MEF2C |
5f28_B | 2e-23 | 1 | 89 | 1 | 94 | MEF2C |
5f28_C | 2e-23 | 1 | 89 | 1 | 94 | MEF2C |
5f28_D | 2e-23 | 1 | 89 | 1 | 94 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01310.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BNU22681 | 1e-117 | U22681.1 Brassica napus AGL15 type 2 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018475144.1 | 1e-172 | PREDICTED: agamous-like MADS-box protein AGL15 isoform X3 | ||||
Swissprot | Q39295 | 1e-147 | AGL15_BRANA; Agamous-like MADS-box protein AGL15 | ||||
TrEMBL | A0A0D3B101 | 1e-150 | A0A0D3B101_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6AFE0 | 1e-150 | A0A3P6AFE0_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g009340.1 | 1e-151 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7518 | 25 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 1e-109 | AGAMOUS-like 15 |