PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01285.1_g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | GRAS | ||||||||
Protein Properties | Length: 542aa MW: 58975.3 Da PI: 4.4496 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 447.5 | 9.1e-137 | 175 | 538 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 lv++L++cAea++++dl+la+al++ + +la++++ +m ++a+yf+++La+r++ s l + + s e a + f+e Rsa1.0_01285.1_g00014.1 175 LVHALVACAEAIQQQDLNLADALVKSVGTLAASQAGAMGKVATYFAQGLARRIYT--SDLISGGSHVGPS-----FEEALQMHFYE 253 689***************************************************9..5555544444443.....33334445*** PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172 +P+lkf+h+taNqaIleav +++rvH+iD++++qG+QWpaL+qaLa Rp+gpps+R+Tgvg+p+++s+++l+e+g++La+fA+++ Rsa1.0_01285.1_g00014.1 254 SCPYLKFAHFTANQAILEAVTTARRVHVIDLGLNQGMQWPALMQALAVRPGGPPSFRLTGVGPPQTESSDSLQELGWKLAQFAQAI 339 ************************************************************************************** PP GRAS 173 gvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257 gv+fef+ l+a++l+dle+e+++++p E+l+Vn+v++lhrll++s+s+e+ +L +vk ++P +v++veqea+hn+ Fl+rf Rsa1.0_01285.1_g00014.1 340 GVEFEFKGLAAESLSDLEPEMFQTRPeSETLVVNSVFELHRLLNRSGSIEK----LLTTVKAVKPSIVTMVEQEANHNGVVFLDRF 421 **************************9************************....******************************* PP GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343 eal+yys+lfdsle +++ s++r+ +++++lgr+ivnvva+eg++r+erhetl++W+ r++++GF pvpl+++a kqa++ll+ Rsa1.0_01285.1_g00014.1 422 NEALHYYSSLFDSLEDGYGLPSQDRV-MSEVYLGRQIVNVVAAEGTDRVERHETLAQWKVRMGSVGFDPVPLGSSAFKQASMLLSV 506 *****************988888775.56677****************************************************** PP GRAS 344 vk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ +dgyrvee++g+l+lgW++rpL+++SaW+ Rsa1.0_01285.1_g00014.1 507 FAgGDGYRVEENDGCLMLGWQTRPLITTSAWK 538 *******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01129 | 8.8E-37 | 38 | 109 | No hit | No description |
Pfam | PF12041 | 1.9E-32 | 38 | 103 | IPR021914 | Transcriptional factor DELLA, N-terminal |
PROSITE profile | PS50985 | 66.524 | 149 | 517 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.2E-134 | 175 | 538 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MKRGHGETWD PQPQSQPPSG SCEGPSMVDK MADDSNMDEL LEVLGYKVRS SEMAEVAQKL 60 EQLEMVLSND DVGSNVLNDT VHYNPSDLSN WVETMLCELN NPESSDLDPT RISEYGLSAI 120 PGLSAFPKAE EGADEEASSK RIRLESVGSW GDPAGDSTRP RPVVVIDSQE TGVRLVHALV 180 ACAEAIQQQD LNLADALVKS VGTLAASQAG AMGKVATYFA QGLARRIYTS DLISGGSHVG 240 PSFEEALQMH FYESCPYLKF AHFTANQAIL EAVTTARRVH VIDLGLNQGM QWPALMQALA 300 VRPGGPPSFR LTGVGPPQTE SSDSLQELGW KLAQFAQAIG VEFEFKGLAA ESLSDLEPEM 360 FQTRPESETL VVNSVFELHR LLNRSGSIEK LLTTVKAVKP SIVTMVEQEA NHNGVVFLDR 420 FNEALHYYSS LFDSLEDGYG LPSQDRVMSE VYLGRQIVNV VAAEGTDRVE RHETLAQWKV 480 RMGSVGFDPV PLGSSAFKQA SMLLSVFAGG DGYRVEENDG CLMLGWQTRP LITTSAWKLA 540 GA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-65 | 182 | 537 | 26 | 378 | Protein SCARECROW |
5b3h_A | 4e-65 | 182 | 537 | 25 | 377 | Protein SCARECROW |
5b3h_D | 4e-65 | 182 | 537 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. Acts as a major GA-response repressor of seed germination, including seed thermoinhibition. Promotes the biosynthesis of abscisic acid (ABA), especially in seed coats to maintain seed dormancy. Delays flowering and adult leaf production. Also regulates the floral development, petal, stamen and anther development, by repressing the continued growth of floral organs. Its activity is probably regulated by other phytohormones such as auxin and ethylene. Involved in the regulation of seed dormancy and germination, including glucose-induced delay of seed germination. Promotes salt tolerance. Acts as a repressor of positive regulators of trichome initiation. Required during the flagellin-derived peptide flg22-mediated growth inhibition. Contributes to the susceptibility to the biotrophic pathogen P.syringae pv. tomato and to the resistance to the necrotrophic pathogens B.cinerea A.brassicicola, probably by repressing the SA-defense pathway and preventing cell death. Prevents stress-induced reactive oxygen species (ROS) accumulation (e.g. salt stress) by acting on the ROS scavenging system, and delays ROS-induced cell death, thus promoting stress tolerance. {ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591, ECO:0000269|PubMed:16400150, ECO:0000269|PubMed:16916886, ECO:0000269|PubMed:17141619, ECO:0000269|PubMed:17384169, ECO:0000269|PubMed:17704233, ECO:0000269|PubMed:18162586, ECO:0000269|PubMed:18450450, ECO:0000269|PubMed:18450451, ECO:0000269|PubMed:18941053, ECO:0000269|PubMed:20093430, ECO:0000269|PubMed:20956298}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01285.1_g00014.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated transiently following seed imbibition to decline rapidly as germination proceeds; this induction is delayed at supraoptimal temperature conditions (e.g. 34 degrees Celsius). Accumulates in seed coats of dormant seeds where germination does not occur after imbibition. Increased levels upon abscisic acid (ABA) treatment. Down-regulated by norflurazon (NF), an ABA biosynthesis inhibitor. Induced by stress such as glucose, salt or mannitol treatment. {ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:16916886, ECO:0000269|PubMed:17384169, ECO:0000269|PubMed:18162586, ECO:0000269|PubMed:18450450, ECO:0000269|PubMed:18941053, ECO:0000269|PubMed:20956298}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018485943.1 | 0.0 | PREDICTED: DELLA protein RGL2 | ||||
Swissprot | Q8GXW1 | 0.0 | RGL2_ARATH; DELLA protein RGL2 | ||||
TrEMBL | A0A0D3CN13 | 0.0 | A0A0D3CN13_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g149920.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM837 | 28 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 0.0 | RGA-like 2 |