PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01078.1_g00017.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 721aa    MW: 79964.5 Da    PI: 6.2715
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01078.1_g00017.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.85e-23184237155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              k ++ Wt +LH+ F++a++++ G +kA+Pk+ile+m++  Lt+e+v+SHLQkYR 
  Rsa1.0_01078.1_g00017.1 184 KSKITWTDDLHDLFLQAIRHI-GLDKAVPKKILEFMNISYLTRENVASHLQKYRQ 237
                              6799*****************.********************************5 PP
2Response_reg53.31.6e-1858926110
                              EEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
             Response_reg  26 vaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                              v +++d++eal +lk ++  +Dli++D  mp+m+Gl+l  +i++e  +lp+iv+++       +e l  Ga++f+ Kp++  el k
  Rsa1.0_01078.1_g00017.1   5 VIAVKDSREALSTLKIERnnIDLIVTDYYMPDMNGLQLKNQITREFGNLPVIVMSSDTG--KEHESLTCGAMGFIQKPIKATELAK 88 
                              5689999*****99555555**********************99999********6555..6799****************99987 PP

                              H CS
             Response_reg 110 a 110
                               
  Rsa1.0_01078.1_g00017.1  89 I 89 
                              5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011026.143194IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.24E-16388No hitNo description
Gene3DG3DSA:3.40.50.23002.6E-19395No hitNo description
SuperFamilySSF521723.42E-18398IPR011006CheY-like superfamily
PfamPF000721.1E-15489IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.603.8E-23182241IPR009057Homeodomain-like
SuperFamilySSF466899.32E-18182241IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-26184237IPR006447Myb domain, plants
PfamPF002491.5E-5188236IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MEITVIAVKD SREALSTLKI ERNNIDLIVT DYYMPDMNGL QLKNQITREF GNLPVIVMSS  60
DTGKEHESLT CGAMGFIQKP IKATELAKIY QLAVTCKRNG KSTLWTENNH NDTYVSIPQR  120
IQLVPEQDNL VMTTKKKLPR SDSRSMNSTN GSCVSTNASR KNKKIKANVG SGDDVEALSQ  180
PSKKSKITWT DDLHDLFLQA IRHIGLDKAV PKKILEFMNI SYLTRENVAS HLQKYRQFLR  240
KVAERGSLCS NMLPSNGIDS TYPYPRITEP CYNNYTSSSW YGTSLNNRSC YSEPGHGIGQ  300
SRLLSNTSDP VRFNQMPHNY MNRSSTYEPH RLGSNLNQPI ESNLNYSSQN EGRRSFLEPT  360
ANKTSQTSQV LGFEQNGLSA INGSGFNNNM LISCGSLAPN QPGTNSYKCS ISTQQGILSA  420
YGSSTSTQPG IRSHISLTPN QPGRSSYGSL TAAKPGMSSH ESLSPNQQGM SSYENLTLNQ  480
PEMNNRGSLP PDQPQMSSYG NLSSNQLGLS SHGILTPNQP GLKIYGTETH NAGLNNFGSL  540
TTHQPGSSNF SYGLQSFVDN ENIAYKPQPH PRSNATAQPN IEIPQQENLS LYDEFGNINE  600
LLCDISNFQL DHNKQQEAVS TTQFELPSNF STEMNQLFSL EKDDDWTFVN TNQGHSIGET  660
SNNVAPEANS QTFNMSTNHD QDAQDFVDWS FLNPADLANE YDFMDSLFNG MNGKGFDDPR  720
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-19183243464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01078.1_g00017.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891950.0AC189195.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB004B12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443368.10.0PREDICTED: putative two-component response regulator ARR21
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLA0A3P6DDP20.0A0A3P6DDP2_BRACM; Uncharacterized protein
STRINGBra009284.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21