PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00999.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 145aa    MW: 16133 Da    PI: 7.9291
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00999.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.3e-1291141155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +++kGVr ++ +g+W AeI+dps+   ++r +lg+f t + A + +++a  +l g
  Rsa1.0_00999.1_g00012.1  91 KKHKGVRKKP-SGKWSAEIWDPSI---KARRWLGTFPTYDRAVQSYEEAQYELAG 141
                              589****999.7*********965...69*********99*********998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-1891145No hitNo description
Gene3DG3DSA:3.30.730.104.2E-1692143IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1292143IPR016177DNA-binding domain
PROSITE profilePS5103217.59692145IPR001471AP2/ERF domain
SMARTSM003808.0E-1092145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MNNSENFQSY VQNENLTPVS QPSYLTRDQE HEIIVSTLRQ VISSPGGDTS SSNWIASEAL  60
PPPDAGPCPI CGVTGCYGCA FPRPVEITKE KKHKGVRKKP SGKWSAEIWD PSIKARRWLG  120
TFPTYDRAVQ SYEEAQYELA GRRSA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00999.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436240.11e-105PREDICTED: putative ethylene-responsive transcription factor ERF121
SwissprotQ9FGC98e-66EF121_ARATH; Putative ethylene-responsive transcription factor ERF121
TrEMBLA0A397YK605e-99A0A397YK60_BRACM; Uncharacterized protein
TrEMBLM4D6L44e-99M4D6L4_BRARP; Uncharacterized protein
STRINGBra012123.1-P1e-100(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67010.14e-68ERF family protein