PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00999.1_g00007.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 221aa MW: 23370.8 Da PI: 9.0088

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00999.1_g00007.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.4	1.4e-37	24	84	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+stntkfCyynny+ sqPr+fCkaCrryWt+GG+lr++PvGg +rk+ k+s Rsa1.0_00999.1_g00007.1 24 QQDQLPCPRCESTNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDIPVGGVSRKSSKRS 84 57889***************************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	2	76	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.4E-33	26	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.584	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MPSDLNESRR LTTKMPHVGA VGDQQDQLPC PRCESTNTKF CYYNNYNFSQ PRHFCKACRR 60 YWTHGGTLRD IPVGGVSRKS SKRSRTCSSV AVSTASVGSR EFPLQATPVL FPPSSNDGGV 120 AAAKGSASSV YGGFTSLLSY NAAASRNGPG GGFNGLEGFG LGLGHGSYFD NVRFGQGITV 180 WPFSSSATDA ASAVTSHVGP TPGTWQFEGP ESKVGFVSGD Y

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00593	DAP	Transfer from AT5G66940	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00999.1_g00007.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857251	2e-31	DQ857251.1 Glycine max Dof2 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018434422.1	1e-162	PREDICTED: dof zinc finger protein DOF5.8
Swissprot	Q9FGD6	1e-113	DOF58_ARATH; Dof zinc finger protein DOF5.8
TrEMBL	A0A397YK78	1e-133	A0A397YK78_BRACM; Uncharacterized protein
TrEMBL	M4D6L0	1e-133	M4D6L0_BRARP; Uncharacterized protein
STRING	Bra012119.1-P	1e-134	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2286	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	1e-73	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]