PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00942.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 404aa MW: 42966.2 Da PI: 4.0714 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00012 | 198 | 220 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k F+++ L H++ H Rsa1.0_00942.1_g00004.1 198 FTCPLCKKGFPTSQALGGHQNAH 220 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.61E-6 | 195 | 226 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.7E-4 | 196 | 225 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.468 | 198 | 225 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.8E-6 | 198 | 222 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 200 | 220 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MSASSSSVAP PKTCNDEIIV AVDESMEKAT ESQVASSVSS SAPQPEKFND VTVAVEESPM 60 EKATENQAVS SACSSAPAPQ PEKSNDVTMA VEEANKEMVA TENQVVSSAG FIVAVEEATE 120 VVATTENQIV PYESSPAPPQ GTDVIVAVEE SREMETDNNN PGLGSALVVT ENPSPGSGAV 180 PTGNQITYLY PSRSNKIFTC PLCKKGFPTS QALGGHQNAH KQEREWEKKR KDMEQEYPGY 240 SFLNSKIDNP LLFFLGGYSS EALSNDNHLG IPLEAFKRRF TGNYPSSSNR FSDPNIAVVP 300 RVAPPTSFFP GNADGSSSGG LGGPTPLYSN YPPMIPRNAP PFPPPQTTNL PSGLYPQGNV 360 LNEVNFISEI GRGNIVEIDD DDDDGGDVEP EEGPSKSWGA DLSL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00942.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018454056.1 | 0.0 | PREDICTED: uncharacterized protein LOC108825235 | ||||
TrEMBL | A0A078G4V7 | 1e-156 | A0A078G4V7_BRANA; BnaA09g03910D protein | ||||
STRING | Bra036609.1-P | 1e-156 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6363 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27880.1 | 4e-66 | C2H2 family protein |