PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00820.1_g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 214aa MW: 24150.6 Da PI: 7.7299 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.2 | 4e-10 | 64 | 110 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rE++RR+ +N++f L + l + + +K +K +iL A++ +++L Rsa1.0_00820.1_g00014.1 64 RACREKKRREMLNDKFMDLSSFLEPT---RTPKTDKPAILDDAIRVVNQL 110 568**********************9...9****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-12 | 51 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.33E-7 | 57 | 111 | No hit | No description |
PROSITE profile | PS50888 | 12.29 | 59 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-7 | 65 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-8 | 65 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-11 | 66 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MCNTAATLSL KLDSIGFGSS QLENEQVCCG VVEINSSSSV KEELEEECSR KRGRSGSCSK 60 PGTRACREKK RREMLNDKFM DLSSFLEPTR TPKTDKPAIL DDAIRVVNQL RGEAHELKET 120 NQKLLEEIKT LKAEKNELRE EKLVLKADKE KMEQQLKSIP SPGFMPPHPA AFHQNKMAVY 180 ASYGYYPNMP MMPYLLPPSQ RDTSQDQQNC SFAA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 49 | 71 | RKRGRSGSCSKPGTRACREKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00820.1_g00014.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018486282.1 | 1e-150 | PREDICTED: transcription factor bHLH34 | ||||
Swissprot | Q9LTC7 | 8e-96 | BH034_ARATH; Transcription factor bHLH34 | ||||
TrEMBL | M4DEK1 | 1e-130 | M4DEK1_BRARP; Uncharacterized protein | ||||
STRING | Bra014923.1-P | 1e-131 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4026 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23210.1 | 1e-71 | bHLH family protein |
Publications ? help Back to Top | |||
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