PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00816.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 339aa    MW: 37565.4 Da    PI: 10.0005
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00816.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.67.1e-104383545
                             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                             k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  Rsa1.0_00816.1_g00006.1 43 KTVRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 83
                             7789************************9877777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-739102IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4384185IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.44E-74386No hitNo description
Gene3DG3DSA:1.20.5.1704.0E-84388No hitNo description
PfamPF001706.8E-74383IPR004827Basic-leucine zipper domain
PROSITE patternPS0003604661IPR004827Basic-leucine zipper domain
PfamPF141445.0E-18126179IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MADMSPITDV STDGDRDLGS EGALVNTAAS DSSERSKNKL DQKTVRRLAQ NREAARKSRL  60
RKKAYVQQLE NSRLKLTQLE QELQRARQQG VFISSTGDQA HSTGGNGALA FDAEYSRWLE  120
EKNKRMNELR SALNAHAGDG ELRIIVDGVM AHYEELFRIK SNAAKNDVFH LLYGMWASVH  180
PKFSRSVSKL HSSSSVSVEM NNVVCKKKQL LANQLEPMTE RQVMGINSLQ ETSQQAEDAL  240
SQGMESLQQS LADTLSSGTL GSSSSGNVAS YMGQMAMAMG KLGTLEGFIR QADNLRLQTL  300
QQMIRVLTTR QSARALLAIH DYSSRLRALS SLWLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00816.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531251e-149AK353125.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-10-O14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445153.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_018445154.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_018445155.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_018445327.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_018445328.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_018445329.10.0PREDICTED: transcription factor TGA2-like
SwissprotQ391400.0TGA6_ARATH; Transcription factor TGA6
TrEMBLA0A3P6DNB40.0A0A3P6DNB4_BRACM; Uncharacterized protein
STRINGBo9g175710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-165TGACG motif-binding factor 6