PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00625.1_g00009.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 337aa MW: 37795.2 Da PI: 6.811

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00625.1_g00009.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.5	7.7e-10	78	118	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L Rsa1.0_00625.1_g00009.1 78 KTVRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 118 667999**********************9877777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.4E-8	74	137	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.438	76	120	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.2E-7	78	118	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.9E-8	78	123	No hit	No description
SuperFamily	SSF57959	4.42E-7	78	121	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.4E-12	161	207	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MVTEESGDVT IWVYSISCKF SVPLSSSNVD LDEKNRMGDT SPRTSGSTDG DMDQNNLMYD 60 GGHVGESSDR SKEKLDQKTV RRLAQNREAA RKSRLRKKAY VQQLENSRLK LTQLEQELQR 120 ARQQGVFISS SGDQSHSTTG NGAMAFDAEY RRWQEDKNRK MKEMSSALDS HASEAELRII 180 VEAVLAHYEE LFRIKSNAAK NDVFHLLLIA SQVEPLTEQQ SQDLNNLQES SQQAEDALSQ 240 GMDSLQQSLS ETLSSGTLGS SSSGNVANYM GQMAMAMGKL GTLEGFIRQA DNLRLQTYQQ 300 MLRKLTTRQS ARALLAIHEY SLRLRALSSL WLARPRE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00625.1_g00009.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ788945	0.0	FJ788945.1 Brassica napus TGA5 transcription factor (TGA5.2) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018449222.1	0.0	PREDICTED: transcription factor TGA5
Refseq	XP_018449230.1	0.0	PREDICTED: transcription factor TGA5
Swissprot	Q39163	1e-169	TGA5_ARATH; Transcription factor TGA5
TrEMBL	A0A3P6D1E4	0.0	A0A3P6D1E4_BRAOL; Uncharacterized protein
STRING	Bo2g007460.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06960.2	1e-144	OCS-element binding factor 5

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zander M,Thurow C,Gatz C TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression. Plant Physiol., 2014. 165(4): p. 1671-1683 [PMID:24989234] Walper E,Weiste C,Mueller MJ,Hamberg M,Dröge-Laser W Screen Identifying Arabidopsis Transcription Factors Involved in the Response to 9-Lipoxygenase-Derived Oxylipins. PLoS ONE, 2016. 11(4): p. e0153216 [PMID:27073862] Huang LJ, et al. Ectopically expressed glutaredoxin ROXY19 negatively regulates the detoxification pathway in Arabidopsis thaliana. BMC Plant Biol., 2016. 16(1): p. 200 [PMID:27624344]