PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00487.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 79aa MW: 9171.13 Da PI: 7.7769 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.8e-08 | 11 | 55 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT E +l+ +a + + + +W +ar +g g+++++++ ++ Rsa1.0_00487.1_g00012.1 11 SWTFKENKLFERALATYDQDtpdRWLHVARAVG-GKSAEEVRRHYE 55 7******************9*************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.88E-13 | 4 | 61 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.94 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 1.0E-8 | 8 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.55E-7 | 11 | 58 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-4 | 11 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.7E-7 | 11 | 55 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MASNSMSSNT SWTFKENKLF ERALATYDQD TPDRWLHVAR AVGGKSAEEV RRHYELLVRD 60 INDIELGRYP HPTYRSNGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-28 | 1 | 78 | 1 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00487.1_g00012.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189373 | 1e-103 | AC189373.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048F07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469839.1 | 5e-54 | PREDICTED: protein RADIALIS-like 3 | ||||
Refseq | XP_018469852.1 | 5e-54 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 8e-41 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A078JFW4 | 3e-46 | A0A078JFW4_BRANA; BnaA01g34510D protein | ||||
TrEMBL | A0A398APM9 | 3e-46 | A0A398APM9_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D5D4 | 3e-46 | M4D5D4_BRARP; Uncharacterized protein | ||||
STRING | Bra011691.1-P | 4e-47 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 3e-35 | RAD-like 6 |