PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00427.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BBR-BPC
Protein Properties Length: 443aa    MW: 50227.7 Da    PI: 8.8668
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00427.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind61.83e-19311091595
                GAGA_bind  15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasal 95 
                              e++++l   +++++ms++aerda+++ern+a+s+k +ava+rd a++qrdkalaer+kal+erdn+l+al+++ensl++a+
  Rsa1.0_00427.1_g00009.1  31 EQHNALV--MNKKIMSILAERDAAVHERNQAVSAKLEAVAARDQALQQRDKALAERDKALIERDNALAALQHHENSLNFAM 109
                              3556666..99****************************************************************998665 PP
2GAGA_bind245.24.5e-75133280152301
                GAGA_bind 152 krqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtt 237
                              ++ +++++k+ k+kk kk +e+ +  v++++  ++ k+++++  ++ln v++De t+PvPvC+CtGa +qCYkWGnGGWqS+CCtt
  Rsa1.0_00427.1_g00009.1 133 TTTSTNTTKAIKRKKGKKVGEDLNLLVASPG--KKCKKDWDTNHFGLNLVTFDEKTMPVPVCTCTGAAHQCYKWGNGGWQSSCCTT 216
                              4567788999999999999999999999999..57*************************************************** PP

                GAGA_bind 238 tiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                              t+S+yPLP+++++r++R++grKmS+++f++lL++LaaeGydls  vDLkd+WA+HGtn+++ti+
  Rsa1.0_00427.1_g00009.1 217 TLSQYPLPQMPNKRHSRVGGRKMSGNVFSRLLSHLAAEGYDLSSHVDLKDYWARHGTNRYITIK 280
                              ***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.3E-1281280IPR010409GAGA-binding transcriptional activator
PfamPF062172.8E-8620280IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MENGGQYANG SDYLKGANSM WNMLPHHQIK EQHNALVMNK KIMSILAERD AAVHERNQAV  60
SAKLEAVAAR DQALQQRDKA LAERDKALIE RDNALAALQH HENSLNFAMS GGGKRYQGDD  120
DGFTLDDVCP TTTTTSTNTT KAIKRKKGKK VGEDLNLLVA SPGKKCKKDW DTNHFGLNLV  180
TFDEKTMPVP VCTCTGAAHQ CYKWGNGGWQ SSCCTTTLSQ YPLPQMPNKR HSRVGGRKMS  240
GNVFSRLLSH LAAEGYDLSS HVDLKDYWAR HGTNRYITIK CSLQRCSISV REVLQEIVQA  300
CLMKMKLNRR LSFVMCVNLM SLEKERRYVL TYLVKYFREV EDRSLDSGEF SKGGFIEEVC  360
EDCSCRRQCA LACPDEICFI HNLCRLLFRK EWSHTGSGWI IYYSLFLMYL HFLILVGFRI  420
FMTISCPSSN NVTTRSPVVR TRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00427.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478600.10.0PREDICTED: protein BASIC PENTACYSTEINE4
RefseqXP_018478601.10.0PREDICTED: protein BASIC PENTACYSTEINE4
SwissprotQ8S8C61e-155BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A0D3C0Y80.0A0A0D3C0Y8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CPR40.0A0A3P6CPR4_BRAOL; Uncharacterized protein
STRINGBo4g145820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-151basic pentacysteine 4