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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00339.1_g00040.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
Trihelix |
Protein Properties |
Length: 443aa MW: 50641.2 Da PI: 7.3291 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00339.1_g00040.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 69.9 | 4.9e-22 | 125 | 231 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrr.gk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66
+Wt+ +v++Li a+ +++++ + g +kk++W++vs++m e+gf++sp+qC++k+++lnkryk++++
Rsa1.0_00339.1_g00040.1 125 KWTDTMVRLLIMAVFYIGDEAGGlGGggdqtadaakkkisttgilQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVND 210
7**************777777642112344556667778888899***************************************** PP
trihelix 67 gekkr.tsessstcpyfdqle 86
+ +++ +++++++ +++ ++
Rsa1.0_00339.1_g00040.1 211 ILGRGtACRVVENQGLLETMD 231
*****5599999999998886 PP
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Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Pfam | PF13837 | 8.0E-20 | 123 | 258 | No hit | No description |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010629 | Biological Process | negative regulation of gene expression |
GO:1900037 | Biological Process | regulation of cellular response to hypoxia |
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
Protein Sequence Length: 443 aa
Download sequence Send
to blast |
MESNVMFSGF SPTMLTLEIP QNPPNPQNPV QFQHPHPHPY TTPDQQTHQH QQQQQQMKPL 60 YPSPYATTKP TTTKQQLSPL SVGGGGEEED DRGSGSGSGC HPEDSSAGTT TTDGKRKISP 120 WHRMKWTDTM VRLLIMAVFY IGDEAGGLGG GGDQTADAAK KKISTTGILQ KKGKWKSVSR 180 AMVEKGFSVS PQQCEDKFND LNKRYKRVND ILGRGTACRV VENQGLLETM DLRLTPKLKD 240 EVKKLLNSKH LFFKEMCAYH NSCGHLDQPQ VPDQVIIPVP VQSKPECFHA GKMGREEEEE 300 SDMAEDSETE IEDTDEDEEE ETRKKRRRVE GVSVKRMREE TARVLDDPGK SAWEKKEWMR 360 RKSLELEERK VGYEWEAVEM EKQKVKWIRY RSKKEREMEK AKLENQRRSL ETERMVLILR 420 RREIEITELQ LAGKRVDPSS ATG
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G10040.1 | 1e-145 | sequence-specific DNA binding transcription factors |