PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00327.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 75aa    MW: 8723.62 Da    PI: 8.956
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00327.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.3e-10751345
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                             +WT +E +l+ +a + +  +   +W+ +ar +g g+++++++ ++ 
  Rsa1.0_00327.1_g00012.1  7 SWTRQENKLFERALAIYDQDtpdRWHNVARAVG-GKSAEEVRRHYE 51
                             7******************9*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.514358IPR017884SANT domain
SMARTSM007172.6E-10456IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-14661IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-6660IPR009057Homeodomain-like
PfamPF002491.6E-8751IPR001005SANT/Myb domain
CDDcd001671.07E-8754No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MASSNTSWTR QENKLFERAL AIYDQDTPDR WHNVARAVGG KSAEEVRRHY ELLIRDVKDI  60
DSGRYPLPTY RSNGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-29174177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00327.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895494e-79AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481512.12e-50PREDICTED: protein RADIALIS-like 3
SwissprotQ6NNN02e-41RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A078JFW41e-43A0A078JFW4_BRANA; BnaA01g34510D protein
TrEMBLA0A398APM91e-43A0A398APM9_BRACM; Uncharacterized protein
TrEMBLM4D5D41e-43M4D5D4_BRARP; Uncharacterized protein
STRINGBra011691.1-P2e-44(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-34RAD-like 6