PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00315.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 255aa    MW: 29793.9 Da    PI: 4.5965
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00315.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33.1e-192982356
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                             + ++f++eq++ Le +Fe++ ++  +++ +LA++lgL+ rqV +WFqN+Ra++k
  Rsa1.0_00315.1_g00008.1 29 NQRRFSDEQIKSLEMMFESETKLEPRKKVQLARELGLQPRQVAIWFQNKRARWK 82
                             6689*************************************************9 PP
2HD-ZIP_I/II122.12.7e-3929120293
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              ++rr+s+eq+k+LE++Fe+e+kLep++Kv+lareLglqprqva+WFqn+RAR+k+kqlE++++ L+++y+ l+++ e+L+ke+++L
  Rsa1.0_00315.1_g00008.1  29 NQRRFSDEQIKSLEMMFESETKLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEFNILRQNYNDLASQFESLKKEKQAL 114
                              68************************************************************************************ PP

              HD-ZIP_I/II  88 reelke 93 
                               +el++
  Rsa1.0_00315.1_g00008.1 115 VSELHR 120
                              *99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.17E-181386IPR009057Homeodomain-like
PROSITE profilePS5007117.6532484IPR001356Homeobox domain
SMARTSM003893.6E-162788IPR001356Homeobox domain
CDDcd000867.47E-152785No hitNo description
PfamPF000461.4E-162982IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-183090IPR009057Homeodomain-like
PRINTSPR000317.7E-65564IPR000047Helix-turn-helix motif
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
PRINTSPR000317.7E-66480IPR000047Helix-turn-helix motif
PfamPF021835.0E-1484125IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MTEGEEYSQG RMSVNPFMTM KKSNHNKNNQ RRFSDEQIKS LEMMFESETK LEPRKKVQLA  60
RELGLQPRQV AIWFQNKRAR WKSKQLETEF NILRQNYNDL ASQFESLKKE KQALVSELHR  120
LNEEVQKTQE EERLCCGNQA AVVALSSTDH ESENEEITRR KQEKEEEVRP EMEVCEKGDD  180
GVLCGHHNDD YADGGYNNNI KREYFGGFEE EADQLMNIVE PADSCLTSSD DWGGFKSDAN  240
LLDQSSSNCP WWDFW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00315.1_g00008.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433939.10.0PREDICTED: homeobox-leucine zipper protein ATHB-7
SwissprotP468971e-139ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A078HUR31e-176A0A078HUR3_BRANA; BnaC04g00750D protein
STRINGBo4g007060.11e-177(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-127homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]